Difference between revisions of "Tiso gene 20348"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2PGADEHYDRAT-RXN 2PGADEHYDRAT-RXN] == * direction: ** REVERSIBLE * common name: ** bifunctional_eno...")
 
(Created page with "Category:Gene == Gene Tiso_gene_20348 == * right end position: ** 589 * transcription direction: ** POSITIVE * left end position: ** 224 * centisome position: ** 15.11471...")
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2PGADEHYDRAT-RXN 2PGADEHYDRAT-RXN] ==
+
== Gene Tiso_gene_20348 ==
* direction:
+
* right end position:
** REVERSIBLE
+
** 589
* common name:
+
* transcription direction:
** bifunctional_enolase2transcriptionalactivator
+
** POSITIVE
** bifunctional_enolase_2_transcriptional_activator
+
* left end position:
** enolase_1
+
** 224
* ec number:
+
* centisome position:
** [http://enzyme.expasy.org/EC/4.2.1.11 EC-4.2.1.11]
+
** 15.11471   
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
+
== Reactions associated ==
* With identifiers:
+
* Reaction: [[KDO-8PSYNTH-RXN]]
** 1 [[2-PG]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c]
+
** Source: [[annotation-in-silico_annotation]]
* With common name(s):
+
*** Assignment: ec-number
** 1 2-phospho-D-glycerate[c] '''<=>''' 1 H2O[c] '''+''' 1 phosphoenolpyruvate[c]
+
== Pathways associated ==
 
+
* [[PWY-7674]]
== Genes associated with this reaction  ==
+
* [[PWY-1269]]
Genes have been associated with this reaction based on different elements listed below.
+
* [[Tiso_gene_5619]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
** [[pantograph]]-[[synechocystis]]
+
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_13317]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** [[pantograph]]-[[synechocystis]]
+
* [[Tiso_gene_14718]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
** [[pantograph]]-[[athaliana]]
+
** [[pantograph]]-[[athaliana]]
+
** [[pantograph]]-[[synechocystis]]
+
** [[pantograph]]-[[esiliculosus]]
+
** [[pantograph]]-[[creinhardtii]]
+
** [[pantograph]]-[[creinhardtii]]
+
** [[pantograph]]-[[creinhardtii]]
+
* [[Tiso_gene_8720]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
** [[pantograph]]-[[athaliana]]
+
** [[pantograph]]-[[athaliana]]
+
** [[pantograph]]-[[synechocystis]]
+
** [[pantograph]]-[[esiliculosus]]
+
** [[pantograph]]-[[creinhardtii]]
+
** [[pantograph]]-[[creinhardtii]]
+
** [[pantograph]]-[[creinhardtii]]
+
== Pathways  ==
+
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
+
** '''9''' reactions found over '''10''' reactions in the full pathway
+
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
+
** '''6''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
+
** '''5''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
+
** '''7''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
+
** '''5''' reactions found over '''13''' reactions in the full pathway
+
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
** '''13''' reactions found over '''13''' reactions in the full pathway
+
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
+
** '''12''' reactions found over '''12''' reactions in the full pathway
+
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
+
** '''4''' reactions found over '''9''' reactions in the full pathway
+
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
+
** '''10''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
+
** '''7''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
+
** '''8''' reactions found over '''12''' reactions in the full pathway
+
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
** '''11''' reactions found over '''15''' reactions in the full pathway
+
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
+
** '''8''' reactions found over '''11''' reactions in the full pathway
+
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
** '''10''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
+
** '''8''' reactions found over '''14''' reactions in the full pathway
+
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
+
** '''14''' reactions found over '''18''' reactions in the full pathway
+
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
+
** '''10''' reactions found over '''12''' reactions in the full pathway
+
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
+
** '''11''' reactions found over '''11''' reactions in the full pathway
+
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
+
** '''8''' reactions found over '''10''' reactions in the full pathway
+
== Reconstruction information  ==
+
* [[orthology]]:
+
** [[pantograph]]:
+
*** [[creinhardtii]]
+
*** [[synechocystis]]
+
*** [[athaliana]]
+
*** [[esiliculosus]]
+
* [[manual]]:
+
** [[primary_network]]
+
* [[annotation]]:
+
** [[pathwaytools]]:
+
*** [[experimental_annotation]]
+
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: right end position=589}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10164 10164]
+
{{#set: transcription direction=POSITIVE}}
* LIGAND-RXN:
+
{{#set: left end position=224}}
** [http://www.genome.jp/dbget-bin/www_bget?R00658 R00658]
+
{{#set: centisome position=15.11471    }}
* UNIPROT:
+
{{#set: reaction associated=KDO-8PSYNTH-RXN}}
** [http://www.uniprot.org/uniprot/P04764 P04764]
+
{{#set: pathway associated=PWY-7674|PWY-1269}}
** [http://www.uniprot.org/uniprot/P07322 P07322]
+
** [http://www.uniprot.org/uniprot/P07323 P07323]
+
** [http://www.uniprot.org/uniprot/P06733 P06733]
+
** [http://www.uniprot.org/uniprot/P19140 P19140]
+
** [http://www.uniprot.org/uniprot/P25704 P25704]
+
** [http://www.uniprot.org/uniprot/P30575 P30575]
+
** [http://www.uniprot.org/uniprot/P33675 P33675]
+
** [http://www.uniprot.org/uniprot/P47647 P47647]
+
** [http://www.uniprot.org/uniprot/Q9JU46 Q9JU46]
+
** [http://www.uniprot.org/uniprot/P37869 P37869]
+
** [http://www.uniprot.org/uniprot/Q9URB2 Q9URB2]
+
** [http://www.uniprot.org/uniprot/Q9CIT0 Q9CIT0]
+
** [http://www.uniprot.org/uniprot/Q9CHS7 Q9CHS7]
+
** [http://www.uniprot.org/uniprot/P43806 P43806]
+
** [http://www.uniprot.org/uniprot/P42448 P42448]
+
** [http://www.uniprot.org/uniprot/P42848 P42848]
+
** [http://www.uniprot.org/uniprot/Q05524 Q05524]
+
** [http://www.uniprot.org/uniprot/P42897 P42897]
+
** [http://www.uniprot.org/uniprot/P40370 P40370]
+
** [http://www.uniprot.org/uniprot/P51913 P51913]
+
** [http://www.uniprot.org/uniprot/P26300 P26300]
+
** [http://www.uniprot.org/uniprot/Q42887 Q42887]
+
** [http://www.uniprot.org/uniprot/P25696 P25696]
+
** [http://www.uniprot.org/uniprot/P00924 P00924]
+
** [http://www.uniprot.org/uniprot/P00925 P00925]
+
** [http://www.uniprot.org/uniprot/P0A6P9 P0A6P9]
+
** [http://www.uniprot.org/uniprot/P29201 P29201]
+
** [http://www.uniprot.org/uniprot/P09104 P09104]
+
** [http://www.uniprot.org/uniprot/P21550 P21550]
+
** [http://www.uniprot.org/uniprot/P08734 P08734]
+
** [http://www.uniprot.org/uniprot/Q7M4Y6 Q7M4Y6]
+
** [http://www.uniprot.org/uniprot/P15429 P15429]
+
** [http://www.uniprot.org/uniprot/P13929 P13929]
+
** [http://www.uniprot.org/uniprot/P15007 P15007]
+
** [http://www.uniprot.org/uniprot/P17182 P17182]
+
** [http://www.uniprot.org/uniprot/P17183 P17183]
+
** [http://www.uniprot.org/uniprot/P26301 P26301]
+
** [http://www.uniprot.org/uniprot/P31683 P31683]
+
** [http://www.uniprot.org/uniprot/Q54274 Q54274]
+
** [http://www.uniprot.org/uniprot/P42896 P42896]
+
** [http://www.uniprot.org/uniprot/Q27727 Q27727]
+
** [http://www.uniprot.org/uniprot/Q9UWJ5 Q9UWJ5]
+
** [http://www.uniprot.org/uniprot/P48285 P48285]
+
** [http://www.uniprot.org/uniprot/Q12007 Q12007]
+
** [http://www.uniprot.org/uniprot/P42222 P42222]
+
** [http://www.uniprot.org/uniprot/P75189 P75189]
+
** [http://www.uniprot.org/uniprot/P77972 P77972]
+
** [http://www.uniprot.org/uniprot/Q49059 Q49059]
+
** [http://www.uniprot.org/uniprot/P42895 P42895]
+
** [http://www.uniprot.org/uniprot/Q42971 Q42971]
+
** [http://www.uniprot.org/uniprot/Q43130 Q43130]
+
** [http://www.uniprot.org/uniprot/O69174 O69174]
+
{{#set: direction=REVERSIBLE}}
+
{{#set: common name=bifunctional_enolase2transcriptionalactivator}}
+
{{#set: common name=bifunctional_enolase_2_transcriptional_activator}}
+
{{#set: common name=enolase_1}}
+
{{#set: ec number=EC-4.2.1.11}}
+
{{#set: gene associated=Tiso_gene_5619|Tiso_gene_13317|Tiso_gene_14718|Tiso_gene_8720}}
+
{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|PWY-7124|PWY-1622|GLUCONEO-PWY|GLYCOLYSIS|NPGLUCAT-PWY|ANAGLYCOLYSIS-PWY|PWY-7218|PWY-6901|P124-PWY|PWY-6886|PWY-5723|PWY-6142|P122-PWY|PWY66-399|PWY-5484|PWY-7003}}
+
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction source=primary_network}}
+
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:32, 21 March 2018

Gene Tiso_gene_20348

  • right end position:
    • 589
  • transcription direction:
    • POSITIVE
  • left end position:
    • 224
  • centisome position:
    • 15.11471
  • Synonym(s):

Reactions associated

Pathways associated

External links