Difference between revisions of "R93"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R93 R93] == * direction: ** LEFT-TO-RIGHT * common name: ** R93 * Synonym(s): == Reaction Formula...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R93 R93] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** polyketide_synthase
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** R93
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** 3-oxoacyl-synthase
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−
* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* Synonym(s):
 
* Synonym(s):
−
** β-ketoacyl-ACP synthase I
 
−
** β-ketoacyl-acyl carrier protein synthetase
 
−
** β-ketoacyl-[acyl carrier protein] synthase
 
−
** condensing enzyme
 
−
** β-ketoacyl acyl carrier protein synthase
 
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
−
** acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[MALONYL-ACP]][c] '''+''' 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[ACP]][c]
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** 1.0 [[PHYTOENE]][c] '''+''' 1.0 [[NADP]][c] '''=>''' 1.0 [[NADPH]][c] '''+''' 1.0 [[PROTON]][c] '''+''' 1.0 [[CPD-7408]][c]
 
* With common name(s):
 
* With common name(s):
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** 1 a malonyl-[acp][c] '''+''' 1 a dodecanoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a 3-oxo-myristoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
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** 1.0 all-trans-phytoene[c] '''+''' 1.0 NADP+[c] '''=>''' 1.0 NADPH[c] '''+''' 1.0 H+[c] '''+''' 1.0 all-trans phytofluene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_500]]
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* Gene: [[Tiso_gene_3579]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-synechocystis]]
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***EC-NUMBER
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* Gene: [[Tiso_gene_2193]]
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* [[Tiso_gene_13394]]
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** Source: [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_15991]]
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−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_14485]]
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−
** [[pantograph]]-[[synechocystis]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_135]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_19302]]
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−
** [[pantograph]]-[[synechocystis]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_10876]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
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−
* [[Tiso_gene_5939]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
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−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=R93}}
−
{{#set: common name=3-oxoacyl-synthase}}
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{{#set: gene associated=Tiso_gene_3579|Tiso_gene_2193}}
−
{{#set: ec number=EC-2.3.1.86}}
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{{#set: in pathway=}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: reconstruction category=orthology}}
−
{{#set: ec number=EC-2.3.1.41}}
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{{#set: reconstruction source=orthology-synechocystis}}
−
{{#set: common name=β-ketoacyl-ACP synthase I|β-ketoacyl-acyl carrier protein synthetase|β-ketoacyl-[acyl carrier protein] synthase|condensing enzyme|β-ketoacyl acyl carrier protein synthase|3-oxoacyl-[acyl-carrier-protein] synthase|acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: gene associated=Tiso_gene_500|Tiso_gene_13394|Tiso_gene_15991|Tiso_gene_14485|Tiso_gene_135|Tiso_gene_19302|Tiso_gene_10876|Tiso_gene_5939|Tiso_gene_136}}
+
−
{{#set: in pathway=PWY-5971}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
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−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:32, 21 March 2018

Reaction R93

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • R93
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 all-trans-phytoene[c] + 1.0 NADP+[c] => 1.0 NADPH[c] + 1.0 H+[c] + 1.0 all-trans phytofluene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=R93&oldid=42267"