Difference between revisions of "RXN-14026"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-3-DIOXYGENASE-RXN NARINGENIN-3-DIOXYGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec nu...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14026 RXN-14026] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_pr...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-3-DIOXYGENASE-RXN NARINGENIN-3-DIOXYGENASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14026 RXN-14026] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** 5_deoxy_cytosolic_type_c_protein
 +
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
 +
** ORF
 +
** 5_-nucleotidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.14.11.9 EC-1.14.11.9]
+
** [http://enzyme.expasy.org/EC/3.1.3.91 EC-3.1.3.91]
 +
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
−
** Flavonone 3-hydroxylase
 
−
** Naringenin,2-oxoglutarate 3-dioxygenase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[NARINGENIN-CMPD]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DIHYDROKAEMPFEROL-CMPD]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CMP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CYTIDINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''+''' 1 (2S)-naringenin[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 (+)-dihydrokaempferol[c]
+
** 1 H2O[c] '''+''' 1 CMP[c] '''=>''' 1 phosphate[c] '''+''' 1 cytidine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3330]]
+
* Gene: [[Tiso_gene_6988]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6640]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13929]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5911]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14435]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14434]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14246]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
+
* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
+
−
** '''5''' reactions found over '''10''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[athaliana]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29368 29368]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02444 R02444]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00511 R00511]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P28038 P28038]
+
−
** [http://www.uniprot.org/uniprot/Q07353 Q07353]
+
−
** [http://www.uniprot.org/uniprot/Q06942 Q06942]
+
−
** [http://www.uniprot.org/uniprot/Q05964 Q05964]
+
−
** [http://www.uniprot.org/uniprot/Q05963 Q05963]
+
−
** [http://www.uniprot.org/uniprot/Q05965 Q05965]
+
−
** [http://www.uniprot.org/uniprot/Q43741 Q43741]
+
−
** [http://www.uniprot.org/uniprot/Q42927 Q42927]
+
−
** [http://www.uniprot.org/uniprot/Q40344 Q40344]
+
−
** [http://www.uniprot.org/uniprot/O49047 O49047]
+
−
** [http://www.uniprot.org/uniprot/Q43262 Q43262]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.14.11.9}}
+
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
−
{{#set: common name=Flavonone 3-hydroxylase|Naringenin,2-oxoglutarate 3-dioxygenase}}
+
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
−
{{#set: gene associated=Tiso_gene_3330}}
+
{{#set: common name=ORF}}
−
{{#set: in pathway=PWY1F-FLAVSYN|PWY-6787}}
+
{{#set: common name=5_-nucleotidase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-3.1.3.91}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: ec number=EC-3.1.3.5}}
−
{{#set: reconstruction source=athaliana|esiliculosus}}
+
{{#set: gene associated=Tiso_gene_6988|Tiso_gene_6640|Tiso_gene_13929|Tiso_gene_5911|Tiso_gene_14435|Tiso_gene_14434|Tiso_gene_14246}}
 +
{{#set: in pathway=PWY-7185}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:32, 21 March 2018

Reaction RXN-14026

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_deoxy_cytosolic_type_c_protein
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
    • 5_-nucleotidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 CMP[c] => 1 phosphate[c] + 1 cytidine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7185, UTP and CTP dephosphorylation I: PWY-7185
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14026&oldid=42277"