Difference between revisions of "RXN-14026"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-722 PWY-722] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14026 RXN-14026] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_pr...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-722 PWY-722] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14026 RXN-14026] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** nicotinate degradation I
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** 5_deoxy_cytosolic_type_c_protein
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** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
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** ORF
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** 5_-nucleotidase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.3.91 EC-3.1.3.91]
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** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
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** maleamate pathway
 
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** nicotinate degradation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''6''' reactions in the full pathway
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* With identifiers:
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* [[RXN-646]]
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** 1 [[WATER]][c] '''+''' 1 [[CMP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CYTIDINE]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_14341]]
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** 1 H2O[c] '''+''' 1 CMP[c] '''=>''' 1 phosphate[c] '''+''' 1 cytidine[c]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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== Genes associated with this reaction  ==
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*** [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* Gene: [[Tiso_gene_6988]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.13.11.9-RXN 1.13.11.9-RXN]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALEATE-ISOMERASE-RXN MALEATE-ISOMERASE-RXN]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=NICOTINATE-DEHYDROGENASE-RXN NICOTINATE-DEHYDROGENASE-RXN]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11318 RXN-11318]
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* Gene: [[Tiso_gene_6640]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7573 RXN-7573]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13929]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5911]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_14435]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14434]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14246]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
== Pathways  ==
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* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1224}}
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* RHEA:
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{{#set: common name=nicotinate degradation I}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29368 29368]
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{{#set: common name=maleamate pathway|nicotinate degradation}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00511 R00511]
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{{#set: total reaction=6}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=17.0}}
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{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
 +
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
 +
{{#set: common name=ORF}}
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{{#set: common name=5_-nucleotidase}}
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{{#set: ec number=EC-3.1.3.91}}
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{{#set: ec number=EC-3.1.3.5}}
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{{#set: gene associated=Tiso_gene_6988|Tiso_gene_6640|Tiso_gene_13929|Tiso_gene_5911|Tiso_gene_14435|Tiso_gene_14434|Tiso_gene_14246}}
 +
{{#set: in pathway=PWY-7185}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:32, 21 March 2018

Reaction RXN-14026

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_deoxy_cytosolic_type_c_protein
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
    • 5_-nucleotidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 CMP[c] => 1 phosphate[c] + 1 cytidine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7185, UTP and CTP dephosphorylation I: PWY-7185
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14026&oldid=42277"