Difference between revisions of "NARINGENIN-3-DIOXYGENASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=T...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-3-DIOXYGENASE-RXN NARINGENIN-3-DIOXYGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec nu...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-3-DIOXYGENASE-RXN NARINGENIN-3-DIOXYGENASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/1.14.11.9 EC-1.14.11.9]
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** dTDP-L-rhamnose biosynthesis I
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* Synonym(s):
 
* Synonym(s):
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** Flavonone 3-hydroxylase
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** Naringenin,2-oxoglutarate 3-dioxygenase
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''4''' reactions in the full pathway
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* With identifiers:
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* [[DTDPDEHYRHAMREDUCT-RXN]]
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** 1 [[NARINGENIN-CMPD]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DIHYDROKAEMPFEROL-CMPD]][c] '''+''' 1 [[SUC]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_4472]]
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** 1 (2S)-naringenin[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''=>''' 1 CO2[c] '''+''' 1 (+)-dihydrokaempferol[c] '''+''' 1 succinate[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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* [[DTDPGLUCDEHYDRAT-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_3330]]
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*** [[Tiso_gene_7329]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_12394]]
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** Source: [[orthology-esiliculosus]]
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** 4 reconstruction source(s) associated:
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== Pathways  ==
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*** [[orthology-athaliana]]
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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*** [[annotation-in-silico_annotation]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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*** [[orthology-esiliculosus]]
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** '''5''' reactions found over '''10''' reactions in the full pathway
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* [[DTDPGLUCOSEPP-RXN]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* Category: [[orthology]]
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*** [[Tiso_gene_14704]]
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** Source: [[orthology-athaliana]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=DTDPDEHYDRHAMEPIM-RXN DTDPDEHYDRHAMEPIM-RXN]
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== External links  ==
 
== External links  ==
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* ECOCYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY]
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** [http://www.genome.jp/dbget-bin/www_bget?R02444 R02444]
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{{#set: taxonomic range=TAX-2157}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P28038 P28038]
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{{#set: common name=dTDP-L-rhamnose biosynthesis I}}
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** [http://www.uniprot.org/uniprot/Q07353 Q07353]
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/Q06942 Q06942]
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/Q05964 Q05964]
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{{#set: completion rate=75.0}}
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** [http://www.uniprot.org/uniprot/Q05963 Q05963]
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** [http://www.uniprot.org/uniprot/Q05965 Q05965]
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** [http://www.uniprot.org/uniprot/Q43741 Q43741]
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** [http://www.uniprot.org/uniprot/Q42927 Q42927]
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** [http://www.uniprot.org/uniprot/Q40344 Q40344]
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** [http://www.uniprot.org/uniprot/O49047 O49047]
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** [http://www.uniprot.org/uniprot/Q43262 Q43262]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.14.11.9}}
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{{#set: common name=Flavonone 3-hydroxylase|Naringenin,2-oxoglutarate 3-dioxygenase}}
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{{#set: gene associated=Tiso_gene_3330}}
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{{#set: in pathway=PWY1F-FLAVSYN|PWY-6787}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:33, 21 March 2018

Reaction NARINGENIN-3-DIOXYGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):
    • Flavonone 3-hydroxylase
    • Naringenin,2-oxoglutarate 3-dioxygenase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 5 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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