Difference between revisions of "PWY-6936"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] == * direction: ** LEFT-...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** methionyl-trna_formyltransferase
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** seleno-amino acid biosynthesis
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** ribosomal_rna_small_subunit_methyltransferase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.2.9 EC-2.1.2.9]
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* Synonym(s):
 
* Synonym(s):
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** Se-amino acid biosynthesis
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** selenocysteine and selenomethionine biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''5''' reactions in the full pathway
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** 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[L-methionyl-tRNAfmet]][c] '''=>''' 1 [[N-formyl-L-methionyl-tRNAfmet]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
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* [[RXN-12726]]
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* With common name(s):
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** 6 associated gene(s):
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** 1 an N10-formyl-tetrahydrofolate[c] '''+''' 1 an L-methionyl-[initiator tRNAmet][c] '''=>''' 1 an N-formyl-L-methionyl-[initiator tRNAmet][c] '''+''' 1 H+[c] '''+''' 1 a tetrahydrofolate[c]
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*** [[Tiso_gene_12184]]
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*** [[Tiso_gene_6110]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_7852]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_819]]
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* [[Tiso_gene_13561]]
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*** [[Tiso_gene_17043]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_2283]]
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***AUTOMATED-NAME-MATCH
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** 5 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_9355]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-creinhardtii]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_13560]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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* [[RXN-12728]]
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***AUTOMATED-NAME-MATCH
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** 1 associated gene(s):
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_3732]]
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***AUTOMATED-NAME-MATCH
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[orthology-creinhardtii]]
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== Reconstruction information  ==
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* [[RXN-12729]]
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* [[orthology]]:
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** 1 associated gene(s):
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** [[pantograph]]:
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*** [[Tiso_gene_3732]]
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*** [[esiliculosus]]
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** 3 reconstruction source(s) associated:
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* [[annotation]]:
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*** [[annotation-in-silico_annotation]]
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** [[pathwaytools]]:
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*** [[annotation-experimental_annotation]]
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*** [[experimental_annotation]]
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*** [[orthology-creinhardtii]]
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*** [[in-silico_annotation]]
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* [[SERINE-O-ACETTRAN-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_7066]]
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*** [[Tiso_gene_10634]]
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*** [[Tiso_gene_4492]]
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** 6 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12730 RXN-12730]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* PLANTCYC : PWY-6936
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** [http://www.genome.jp/dbget-bin/www_bget?R03940 R03940]
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* ARACYC:
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* UNIPROT:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-6936 PWY-6936]
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** [http://www.uniprot.org/uniprot/P94463 P94463]
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.uniprot.org/uniprot/Q9PJ28 Q9PJ28]
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{{#set: common name=seleno-amino acid biosynthesis}}
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** [http://www.uniprot.org/uniprot/P50932 P50932]
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{{#set: common name=Se-amino acid biosynthesis|selenocysteine and selenomethionine biosynthesis}}
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** [http://www.uniprot.org/uniprot/P47605 P47605]
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/P44787 P44787]
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{{#set: total reaction=5}}
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** [http://www.uniprot.org/uniprot/P56461 P56461]
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{{#set: completion rate=80.0}}
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** [http://www.uniprot.org/uniprot/Q9CEE9 Q9CEE9]
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** [http://www.uniprot.org/uniprot/O51091 O51091]
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** [http://www.uniprot.org/uniprot/Q9JWY9 Q9JWY9]
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** [http://www.uniprot.org/uniprot/P23882 P23882]
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** [http://www.uniprot.org/uniprot/P32785 P32785]
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** [http://www.uniprot.org/uniprot/P75235 P75235]
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** [http://www.uniprot.org/uniprot/Q55163 Q55163]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=methionyl-trna_formyltransferase}}
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{{#set: common name=ribosomal_rna_small_subunit_methyltransferase}}
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{{#set: ec number=EC-2.1.2.9}}
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{{#set: gene associated=Tiso_gene_13561|Tiso_gene_9355|Tiso_gene_13560}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:33, 21 March 2018

Pathway PWY-6936

  • taxonomic range:
  • common name:
    • seleno-amino acid biosynthesis
  • Synonym(s):
    • Se-amino acid biosynthesis
    • selenocysteine and selenomethionine biosynthesis

Reaction(s) found

4 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6936&oldid=42307"