Difference between revisions of "PWY-5254"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] == * direction: ** LEFT-...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5254 PWY-5254] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183980 TAX-...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5254 PWY-5254] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183980 TAX-183980]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183988 TAX-183988]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-224756]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183939 TAX-183939]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183925 TAX-183925]
 
* common name:
 
* common name:
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** methionyl-trna_formyltransferase
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** methanofuran biosynthesis
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** ribosomal_rna_small_subunit_methyltransferase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.2.9 EC-2.1.2.9]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''8''' reactions in the full pathway
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** 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[L-methionyl-tRNAfmet]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[N-formyl-L-methionyl-tRNAfmet]][c] '''+''' 1 [[THF-GLU-N]][c]
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* [[TYROSINE-DECARBOXYLASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 an N10-formyl-tetrahydrofolate[c] '''+''' 1 an L-methionyl-[initiator tRNAmet][c] '''=>''' 1 H+[c] '''+''' 1 an N-formyl-L-methionyl-[initiator tRNAmet][c] '''+''' 1 a tetrahydrofolate[c]
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*** [[Tiso_gene_3686]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* [[Tiso_gene_13560]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15944 RXN-15944]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15945 RXN-15945]
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***AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15946 RXN-15946]
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** EXPERIMENTAL_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15947 RXN-15947]
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***AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15949 RXN-15949]
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* [[Tiso_gene_13561]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8119 RXN-8119]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8123 RXN-8123]
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_9355]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-183980}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03940 R03940]
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{{#set: taxonomic range=TAX-183988}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-224756}}
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** [http://www.uniprot.org/uniprot/P94463 P94463]
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{{#set: taxonomic range=TAX-183939}}
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** [http://www.uniprot.org/uniprot/Q9PJ28 Q9PJ28]
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{{#set: taxonomic range=TAX-183925}}
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** [http://www.uniprot.org/uniprot/P50932 P50932]
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{{#set: common name=methanofuran biosynthesis}}
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** [http://www.uniprot.org/uniprot/P47605 P47605]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P44787 P44787]
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{{#set: total reaction=8}}
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** [http://www.uniprot.org/uniprot/P56461 P56461]
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{{#set: completion rate=13.0}}
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** [http://www.uniprot.org/uniprot/Q9CEE9 Q9CEE9]
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** [http://www.uniprot.org/uniprot/O51091 O51091]
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** [http://www.uniprot.org/uniprot/Q9JWY9 Q9JWY9]
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** [http://www.uniprot.org/uniprot/P23882 P23882]
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** [http://www.uniprot.org/uniprot/P32785 P32785]
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** [http://www.uniprot.org/uniprot/P75235 P75235]
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** [http://www.uniprot.org/uniprot/Q55163 Q55163]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=methionyl-trna_formyltransferase}}
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{{#set: common name=ribosomal_rna_small_subunit_methyltransferase}}
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{{#set: ec number=EC-2.1.2.9}}
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{{#set: gene associated=Tiso_gene_13560|Tiso_gene_13561|Tiso_gene_9355}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:33, 21 March 2018

Pathway PWY-5254

Reaction(s) found

1 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5254&oldid=42321"