Difference between revisions of "PWY-5254"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5254 PWY-5254] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183980 TAX-...")
 
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[[Category:Pathway]]
 
[[Category:Pathway]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5254 PWY-5254] ==
 
* taxonomic range:
 
* taxonomic range:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183980 TAX-183980]
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183988 TAX-183988]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-224756 TAX-224756]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183939 TAX-183939]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183925 TAX-183925]
 
* common name:
 
* common name:
** palmitate biosynthesis II (bacteria and plants)
+
** methanofuran biosynthesis
 
* Synonym(s):
 
* Synonym(s):
** palmitic acid biosynthesis
 
** de novo lipogenesis
 
  
 
== Reaction(s) found ==
 
== Reaction(s) found ==
  '''31''' reactions found over '''31''' reactions in the full pathway
+
  '''1''' reactions found over '''8''' reactions in the full pathway
* [[3.1.2.21-RXN]]
+
* [[TYROSINE-DECARBOXYLASE-RXN]]
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
* [[4.2.1.58-RXN]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_135]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
* [[4.2.1.59-RXN]]
+
** 7 associated gene(s):
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_6885]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_13394]]
+
** 4 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-synechocystis]]
+
* [[4.2.1.61-RXN]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_10876]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
* [[RXN-16393]]
+
** 9 associated gene(s):
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_348]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_9394]]
+
*** [[Tiso_gene_4191]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_7855]]
+
*** [[Tiso_gene_10876]]
+
** 2 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[annotation-in-silico_annotation]]
+
* [[RXN-9514]]
+
** 10 associated gene(s):
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_16579]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_10415]]
+
*** [[Tiso_gene_624]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-synechocystis]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9516]]
+
** 4 associated gene(s):
+
*** [[Tiso_gene_5939]]
+
*** [[Tiso_gene_14485]]
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_19302]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
* [[RXN-9518]]
+
** 7 associated gene(s):
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_13083]]
+
** 4 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9520]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_136]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
* [[RXN-9523]]
+
** 4 associated gene(s):
+
*** [[Tiso_gene_5939]]
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_14485]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
* [[RXN-9524]]
+
** 10 associated gene(s):
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_624]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_10415]]
+
*** [[Tiso_gene_16579]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_13394]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-synechocystis]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9527]]
+
** 4 associated gene(s):
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_5939]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_14485]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
* [[RXN-9528]]
+
** 10 associated gene(s):
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_624]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_16579]]
+
*** [[Tiso_gene_10415]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_9885]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-synechocystis]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9531]]
+
** 4 associated gene(s):
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_14485]]
+
*** [[Tiso_gene_5939]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
* [[RXN-9532]]
+
** 7 associated gene(s):
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_135]]
+
** 4 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9533]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_6884]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
* [[RXN-9535]]
+
** 9 associated gene(s):
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_15991]]
+
*** [[Tiso_gene_14485]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_5939]]
+
*** [[Tiso_gene_136]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
* [[RXN-9536]]
+
** 10 associated gene(s):
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_10415]]
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_624]]
+
*** [[Tiso_gene_16579]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-synechocystis]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9537]]
+
** 9 associated gene(s):
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_6884]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_9421]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_6885]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_6671]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[manual-primary_network]]
+
*** [[orthology-creinhardtii]]
+
*** [[orthology-synechocystis]]
+
*** [[annotation-in-silico_annotation]]
+
* [[RXN-9539]]
+
** 4 associated gene(s):
+
*** [[Tiso_gene_5939]]
+
*** [[Tiso_gene_14485]]
+
*** [[Tiso_gene_19302]]
+
*** [[Tiso_gene_15991]]
+
** 6 reconstruction source(s) associated:
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-synechocystis]]
+
*** [[manual-primary_network]]
+
* [[RXN-9540]]
+
** 7 associated gene(s):
+
*** [[Tiso_gene_9885]]
+
*** [[Tiso_gene_13083]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_500]]
+
** 4 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
*** [[orthology-esiliculosus]]
+
* [[RXN-9549]]
+
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
* [[RXN-9623]]
+
** 10 associated gene(s):
+
*** [[Tiso_gene_9394]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_12275]]
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_7855]]
+
*** [[Tiso_gene_348]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_4191]]
+
** 5 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[orthology-athaliana]]
+
*** [[orthology-creinhardtii]]
+
*** [[orthology-esiliculosus]]
+
*** [[annotation-experimental_annotation]]
+
* [[RXN-9655]]
+
** 6 associated gene(s):
+
*** [[Tiso_gene_10876]]
+
*** [[Tiso_gene_136]]
+
*** [[Tiso_gene_500]]
+
*** [[Tiso_gene_13394]]
+
*** [[Tiso_gene_135]]
+
*** [[Tiso_gene_6884]]
+
** 3 reconstruction source(s) associated:
+
*** [[annotation-in-silico_annotation]]
+
*** [[manual-primary_network]]
+
*** [[annotation-experimental_annotation]]
+
* [[RXN-9657]]
+
 
** 1 associated gene(s):
 
** 1 associated gene(s):
*** [[Tiso_gene_10778]]
+
*** [[Tiso_gene_3686]]
 
** 1 reconstruction source(s) associated:
 
** 1 reconstruction source(s) associated:
*** [[orthology-esiliculosus]]
 
* [[RXN-9658]]
 
** 1 associated gene(s):
 
*** [[Tiso_gene_10778]]
 
** 2 reconstruction source(s) associated:
 
*** [[orthology-synechocystis]]
 
*** [[orthology-esiliculosus]]
 
* [[RXN-9659]]
 
** 1 associated gene(s):
 
*** [[Tiso_gene_10778]]
 
** 2 reconstruction source(s) associated:
 
*** [[orthology-synechocystis]]
 
*** [[orthology-esiliculosus]]
 
* [[RXN-9660]]
 
** 1 associated gene(s):
 
*** [[Tiso_gene_10778]]
 
** 1 reconstruction source(s) associated:
 
*** [[orthology-esiliculosus]]
 
* [[RXN-9661]]
 
** 1 associated gene(s):
 
*** [[Tiso_gene_10778]]
 
** 1 reconstruction source(s) associated:
 
*** [[orthology-esiliculosus]]
 
* [[RXN-9662]]
 
** 1 associated gene(s):
 
*** [[Tiso_gene_10778]]
 
** 1 reconstruction source(s) associated:
 
*** [[orthology-esiliculosus]]
 
* [[RXN-9663]]
 
** 1 associated gene(s):
 
*** [[Tiso_gene_10778]]
 
** 2 reconstruction source(s) associated:
 
*** [[manual-primary_network]]
 
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15944 RXN-15944]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15945 RXN-15945]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15946 RXN-15946]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15947 RXN-15947]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15949 RXN-15949]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8119 RXN-8119]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8123 RXN-8123]
 
== External links  ==
 
== External links  ==
* ECOCYC:
+
{{#set: taxonomic range=TAX-183980}}
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
{{#set: taxonomic range=TAX-183988}}
{{#set: taxonomic range=TAX-33090}}
+
{{#set: taxonomic range=TAX-224756}}
{{#set: taxonomic range=TAX-2}}
+
{{#set: taxonomic range=TAX-183939}}
{{#set: common name=palmitate biosynthesis II (bacteria and plants)}}
+
{{#set: taxonomic range=TAX-183925}}
{{#set: common name=palmitic acid biosynthesis|de novo lipogenesis}}
+
{{#set: common name=methanofuran biosynthesis}}
{{#set: reaction found=31}}
+
{{#set: reaction found=1}}
{{#set: total reaction=31}}
+
{{#set: total reaction=8}}
{{#set: completion rate=100.0}}
+
{{#set: completion rate=13.0}}

Latest revision as of 19:33, 21 March 2018

Pathway PWY-5254

Reaction(s) found

1 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links