Difference between revisions of "DAPLYSINESYN-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.41-RXN 2.3.1.41-RXN] == * direction: ** REVERSIBLE * common name: ** 3-oxoacyl-synthase * ec...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.41-RXN 2.3.1.41-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** 3-oxoacyl-synthase
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** L-lysine biosynthesis I
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* Synonym(s):
 
* Synonym(s):
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** L-lysine and L-diaminopimelate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''9''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[ACYL-ACP]][c] '''<=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H+[c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 an acyl-[acyl-carrier protein][c] '''<=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 a 3-oxoacyl-[acp][c] '''+''' 1 CO2[c]
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*** [[Tiso_gene_18603]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_9885]]
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*** [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-athaliana]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_14485]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-creinhardtii]]
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* [[Tiso_gene_5939]]
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* [[ASPARTATEKIN-RXN]]
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** IN-SILICO_ANNOTATION
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** 4 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_4345]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_17057]]
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***EC-NUMBER
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*** [[Tiso_gene_13809]]
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* [[Tiso_gene_15991]]
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*** [[Tiso_gene_16097]]
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** [[pantograph]]-[[esiliculosus]]
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** 7 reconstruction source(s) associated:
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* [[Tiso_gene_19302]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_13083]]
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*** [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-athaliana]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-synechocystis]]
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== Pathways  ==
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*** [[manual-primary_network]]
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== Reconstruction information  ==
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*** [[orthology-creinhardtii]]
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* [[orthology]]:
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* [[DIAMINOPIMDECARB-RXN]]
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** [[pantograph]]:
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** 2 associated gene(s):
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*** [[esiliculosus]]
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*** [[Tiso_gene_10737]]
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* [[annotation]]:
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*** [[Tiso_gene_12041]]
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** [[pathwaytools]]:
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** 6 reconstruction source(s) associated:
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*** [[experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[DIAMINOPIMEPIM-RXN]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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* [[DIHYDRODIPICSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14829]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-14014]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13314]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCCDIAMINOPIMDESUCC-RXN SUCCDIAMINOPIMDESUCC-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCCINYLDIAMINOPIMTRANS-RXN SUCCINYLDIAMINOPIMTRANS-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=TETHYDPICSUCC-RXN TETHYDPICSUCC-RXN]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* ECOCYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R02768 R02768]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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{{#set: direction=REVERSIBLE}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: common name=L-lysine biosynthesis I}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: common name=L-lysine and L-diaminopimelate biosynthesis}}
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{{#set: gene associated=Tiso_gene_9885|Tiso_gene_14485|Tiso_gene_5939|Tiso_gene_15991|Tiso_gene_19302|Tiso_gene_13083}}
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{{#set: reaction found=6}}
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{{#set: in pathway=}}
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{{#set: total reaction=9}}
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{{#set: reconstruction category=orthology}}
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{{#set: completion rate=67.0}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:33, 21 March 2018

Pathway DAPLYSINESYN-PWY

  • taxonomic range:
  • common name:
    • L-lysine biosynthesis I
  • Synonym(s):
    • L-lysine and L-diaminopimelate biosynthesis

Reaction(s) found

6 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DAPLYSINESYN-PWY&oldid=42324"