Difference between revisions of "3.5.1.88-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLCOBINAMIDE ADENOSYLCOBINAMIDE] == * smiles: ** C[CH](CNC(CCC4(C8(N3([Co--]17([N+]5(C(=C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.88-RXN 3.5.1.88-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polypeptide_deformyla...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLCOBINAMIDE ADENOSYLCOBINAMIDE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.88-RXN 3.5.1.88-RXN] ==
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* smiles:
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* direction:
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** C[CH](CNC(CCC4(C8(N3([Co--]17([N+]5(C(=C(C)C2(=[N+]1C(C(C2CCC(N)=O)(CC(=O)N)C)(C)[CH]3C(CC(=O)N)4))C(C(CCC(=O)N)C=5C=C6(C(C)(C)C(CCC(=O)N)C(=[N+]67)C=8C))(CC(=O)N)C))CC9(OC(C(O)C(O)9)N%11(C=NC%10(=C(N)N=CN=C%10%11))))))C)=O)O
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** adenosylcobinamide
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** polypeptide_deformylase
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* inchi key:
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* ec number:
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** InChIKey=KQXSPGAEBZWHMC-VUCSARQQSA-M
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** [http://enzyme.expasy.org/EC/3.5.1.88 EC-3.5.1.88]
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* molecular weight:
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** 1240.332   
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* Synonym(s):
 
* Synonym(s):
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** AdoCbi
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[BTUR2-RXN]]
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** 1 [[FORMYL-L-METHIONYL-PEPTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[METHIONYL-PEPTIDE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 a [protein] N-terminal-formyl-L-methionine[c] '''+''' 1 H2O[c] '''=>''' 1 formate[c] '''+''' 1 an N-terminal L-methionyl-[protein][c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_14998]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?C06508 C06508]
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** [http://www.genome.jp/dbget-bin/www_bget?R05635 R05635]
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* HMDB : HMDB06903
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{{#set: direction=LEFT-TO-RIGHT}}
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* CHEBI:
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{{#set: common name=polypeptide_deformylase}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=2480 2480]
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{{#set: ec number=EC-3.5.1.88}}
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* BIGG : adocbi
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{{#set: gene associated=Tiso_gene_14998}}
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* PUBCHEM:
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{{#set: in pathway=}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=91819767 91819767]
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{{#set: reconstruction category=annotation}}
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{{#set: smiles=C[CH](CNC(CCC4(C8(N3([Co--]17([N+]5(C(=C(C)C2(=[N+]1C(C(C2CCC(N)=O)(CC(=O)N)C)(C)[CH]3C(CC(=O)N)4))C(C(CCC(=O)N)C=5C=C6(C(C)(C)C(CCC(=O)N)C(=[N+]67)C=8C))(CC(=O)N)C))CC9(OC(C(O)C(O)9)N%11(C=NC%10(=C(N)N=CN=C%10%11))))))C)=O)O}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: common name=adenosylcobinamide}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: inchi key=InChIKey=KQXSPGAEBZWHMC-VUCSARQQSA-M}}
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{{#set: molecular weight=1240.332    }}
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{{#set: common name=AdoCbi}}
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{{#set: produced by=BTUR2-RXN}}
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Latest revision as of 20:33, 21 March 2018

Reaction 3.5.1.88-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polypeptide_deformylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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