Difference between revisions of "RXN-11410"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-SYNTHASE-RXN 3-DEHYDROQUINATE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11410 RXN-11410] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-SYNTHASE-RXN 3-DEHYDROQUINATE-SYNTHASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11410 RXN-11410] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** 3-dehydroquinate_synthase
 
−
** pentafunctional_protein
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/4.2.3.4 EC-4.2.3.4]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P]][c] '''=>''' 1 [[DEHYDROQUINATE]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[DGTP]][c] '''+''' 2 [[CPD-12377]][c] '''=>''' 1 [[CPD0-1905]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-deoxy-D-arabino-heptulosonate 7-phosphate[c] '''=>''' 1 3-dehydroquinate[c] '''+''' 1 phosphate[c]
+
** 1 dGTP[c] '''+''' 2 hydroxyl radical[c] '''=>''' 1 8-oxo-dGTP[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_3445]]
 
−
** IN-SILICO_ANNOTATION
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Tiso_gene_3446]]
 
−
** IN-SILICO_ANNOTATION
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Tiso_gene_5752]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_3447]]
 
−
** IN-SILICO_ANNOTATION
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Tiso_gene_3974]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
** [[pantograph]]-[[creinhardtii]]
 
−
* [[Tiso_gene_5753]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6164]], 3-dehydroquinate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6164 PWY-6164]
+
* [[PWY-6502]], oxidized GTP and dGTP detoxification: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6502 PWY-6502]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21968 21968]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03083 R03083]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
 
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
 
−
** [http://www.uniprot.org/uniprot/Q9CES8 Q9CES8]
 
−
** [http://www.uniprot.org/uniprot/Q9PNT2 Q9PNT2]
 
−
** [http://www.uniprot.org/uniprot/P43879 P43879]
 
−
** [http://www.uniprot.org/uniprot/Q9JVW5 Q9JVW5]
 
−
** [http://www.uniprot.org/uniprot/P0A4Z4 P0A4Z4]
 
−
** [http://www.uniprot.org/uniprot/P07639 P07639]
 
−
** [http://www.uniprot.org/uniprot/Q9P7R0 Q9P7R0]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=3-dehydroquinate_synthase}}
+
{{#set: in pathway=PWY-6502}}
−
{{#set: common name=pentafunctional_protein}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: ec number=EC-4.2.3.4}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
−
{{#set: gene associated=Tiso_gene_3445|Tiso_gene_3446|Tiso_gene_5752|Tiso_gene_3447|Tiso_gene_3974|Tiso_gene_5753}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: in pathway=PWY-6164}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:33, 21 March 2018

Reaction RXN-11410

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dGTP[c] + 2 hydroxyl radical[c] => 1 8-oxo-dGTP[c] + 1 H2O[c]

Genes associated with this reaction

Pathways

  • PWY-6502, oxidized GTP and dGTP detoxification: PWY-6502
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11410&oldid=42344"