Difference between revisions of "PWY-5737"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9539 RXN-9539] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-palmitoyl-[acyl-carrier...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5737 PWY-5737] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9539 RXN-9539] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5737 PWY-5737] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** 3-oxo-palmitoyl-[acyl-carrier protein] synthase
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** (5R)-carbapenem carboxylate biosynthesis
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** 3-oxoacyl-synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* Synonym(s):
 
* Synonym(s):
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** (R)-1-carbapen-2-em-3-carboxylate biosynthesis
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** (5R)-carbapenem-3-carboxylate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''6''' reactions in the full pathway
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** 1 [[Myristoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[3-oxo-palmitoyl-ACPs]][c]
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* [[RXN-14903]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 a myristoyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 a 3-oxo-palmitoyl-[acp][c]
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*** [[Tiso_gene_18826]]
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*** [[Tiso_gene_18825]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_9762]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_5939]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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== Reaction(s) not found ==
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** EXPERIMENTAL_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8947 RXN-8947]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8948 RXN-8948]
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* [[Tiso_gene_15991]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8949 RXN-8949]
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8950 RXN-8950]
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8952 RXN-8952]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19302]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14485]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=3-oxo-palmitoyl-[acyl-carrier protein] synthase}}
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{{#set: common name=(5R)-carbapenem carboxylate biosynthesis}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: common name=(R)-1-carbapen-2-em-3-carboxylate biosynthesis|(5R)-carbapenem-3-carboxylate biosynthesis}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: reaction found=1}}
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{{#set: gene associated=Tiso_gene_5939|Tiso_gene_15991|Tiso_gene_19302|Tiso_gene_14485}}
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{{#set: total reaction=6}}
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{{#set: in pathway=PWY-5971}}
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{{#set: completion rate=17.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:33, 21 March 2018

Pathway PWY-5737

  • taxonomic range:
  • common name:
    • (5R)-carbapenem carboxylate biosynthesis
  • Synonym(s):
    • (R)-1-carbapen-2-em-3-carboxylate biosynthesis
    • (5R)-carbapenem-3-carboxylate biosynthesis

Reaction(s) found

1 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5737&oldid=42355"