Difference between revisions of "Tiso gene 12889"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] == * direction: ** LEFT-...")
 
(Created page with "Category:Gene == Gene Tiso_gene_12889 == * right end position: ** 3613 * transcription direction: ** POSITIVE * left end position: ** 1011 * centisome position: ** 15.1870...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] ==
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== Gene Tiso_gene_12889 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3613
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* common name:
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* transcription direction:
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** methionyl-trna_formyltransferase
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** POSITIVE
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** ribosomal_rna_small_subunit_methyltransferase
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* left end position:
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* ec number:
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** 1011
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** [http://enzyme.expasy.org/EC/2.1.2.9 EC-2.1.2.9]
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* centisome position:
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** 15.18702   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ASPAMINOTRANS-RXN]]
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** 1 [[L-methionyl-tRNAfmet]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[N-formyl-L-methionyl-tRNAfmet]][c] '''+''' 1 [[THF-GLU-N]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 an L-methionyl-[initiator tRNAmet][c] '''+''' 1 an N10-formyl-tetrahydrofolate[c] '''=>''' 1 H+[c] '''+''' 1 an N-formyl-L-methionyl-[initiator tRNAmet][c] '''+''' 1 a tetrahydrofolate[c]
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* Reaction: [[RXN-10814]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-11737]]
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* [[Tiso_gene_13561]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-13697]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_13560]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***AUTOMATED-NAME-MATCH
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* [[PWY-5913]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-6318]]
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***AUTOMATED-NAME-MATCH
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* [[PWY-7383]]
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* [[Tiso_gene_9355]]
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* [[ASPARTATE-DEG1-PWY]]
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** IN-SILICO_ANNOTATION
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* [[PWY-6643]]
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***EC-NUMBER
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* [[PWY-6642]]
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== Pathways  ==
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* [[PWY-6638]]
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== Reconstruction information  ==
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* [[ASPARTATESYN-PWY]]
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* [[orthology]]:
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* [[PWY-7117]]
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** [[pantograph]]:
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* [[GLUTDEG-PWY]]
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*** [[esiliculosus]]
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* [[PWY-7115]]
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* [[annotation]]:
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* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
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** [[pathwaytools]]:
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* [[ASPARAGINE-DEG1-PWY-1]]
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=3613}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03940 R03940]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: left end position=1011}}
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** [http://www.uniprot.org/uniprot/P94463 P94463]
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{{#set: centisome position=15.18702    }}
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** [http://www.uniprot.org/uniprot/Q9PJ28 Q9PJ28]
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{{#set: reaction associated=ASPAMINOTRANS-RXN|RXN-10814|RXN-11737|RXN-13697}}
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** [http://www.uniprot.org/uniprot/P50932 P50932]
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{{#set: pathway associated=PWY-5913|PWY-6318|PWY-7383|ASPARTATE-DEG1-PWY|PWY-6643|PWY-6642|PWY-6638|ASPARTATESYN-PWY|PWY-7117|GLUTDEG-PWY|PWY-7115|MALATE-ASPARTATE-SHUTTLE-PWY|ASPARAGINE-DEG1-PWY-1}}
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** [http://www.uniprot.org/uniprot/P47605 P47605]
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** [http://www.uniprot.org/uniprot/P44787 P44787]
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** [http://www.uniprot.org/uniprot/P56461 P56461]
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** [http://www.uniprot.org/uniprot/Q9CEE9 Q9CEE9]
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** [http://www.uniprot.org/uniprot/O51091 O51091]
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** [http://www.uniprot.org/uniprot/Q9JWY9 Q9JWY9]
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** [http://www.uniprot.org/uniprot/P23882 P23882]
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** [http://www.uniprot.org/uniprot/P32785 P32785]
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** [http://www.uniprot.org/uniprot/P75235 P75235]
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** [http://www.uniprot.org/uniprot/Q55163 Q55163]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=methionyl-trna_formyltransferase}}
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{{#set: common name=ribosomal_rna_small_subunit_methyltransferase}}
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{{#set: ec number=EC-2.1.2.9}}
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{{#set: gene associated=Tiso_gene_13561|Tiso_gene_13560|Tiso_gene_9355}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:33, 21 March 2018

Gene Tiso_gene_12889

  • right end position:
    • 3613
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1011
  • centisome position:
    • 15.18702
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12889&oldid=42358"