Difference between revisions of "Tiso gene 18566"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEH-RXN PYRUVDEH-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
(Created page with "Category:Gene == Gene Tiso_gene_18566 == * right end position: ** 2300 * transcription direction: ** POSITIVE * left end position: ** 24 * centisome position: ** 0.8163265...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEH-RXN PYRUVDEH-RXN] ==
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== Gene Tiso_gene_18566 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2300
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.2.1 EC-1.2.1]
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** POSITIVE
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* left end position:
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** 24
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* centisome position:
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** 0.8163265   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACOA120or]]
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** 1 [[NAD]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[ACOA140or]]
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** 1 NAD+[c] '''+''' 1 coenzyme A[c] '''+''' 1 pyruvate[c] '''=>''' 1 NADH[c] '''+''' 1 acetyl-CoA[c] '''+''' 1 CO2[c]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ACOA160or]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[ACOA40or]]
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* [[Tiso_gene_17539]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[ACOA80or]]
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* [[Tiso_gene_19780]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[athaliana]]
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* Reaction: [[ACYL-COA-OXIDASE-RXN]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_7519]]
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* Reaction: [[LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_9330]]
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*** Assignment: ec-number
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** [[pantograph]]-[[athaliana]]
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* Reaction: [[RXN-10696]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_6983]]
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* Reaction: [[RXN-10706]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_2515]]
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* Reaction: [[RXN-10707]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_2693]]
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* Reaction: [[RXN-11026]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* Reaction: [[RXN-11734]]
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* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
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** Source: [[annotation-in-silico_annotation]]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
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* Reaction: [[RXN-12518]]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
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*** Assignment: ec-number
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** '''8''' reactions found over '''11''' reactions in the full pathway
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** Source: [[orthology-esiliculosus]]
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* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
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* Reaction: [[RXN-12669]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]], superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-TCA-GLYOX-BYPASS GLYCOLYSIS-TCA-GLYOX-BYPASS]
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*** Assignment: ec-number
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** '''3''' reactions found over '''5''' reactions in the full pathway
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** Source: [[orthology-esiliculosus]]
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* [[PWY-5482]], pyruvate fermentation to acetate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5482 PWY-5482]
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* Reaction: [[RXN-13451]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* [[orthology]]:
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* Reaction: [[RXN-13615]]
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** [[pantograph]]:
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** Source: [[annotation-in-silico_annotation]]
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*** [[synechocystis]]
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*** Assignment: ec-number
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*** [[esiliculosus]]
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* Reaction: [[RXN-14131]]
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*** [[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14193]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14229]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14262]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14278]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14576]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14771]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14775]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14785]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14789]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14796]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-16134]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16540]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16557]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17113]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-6920]]
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* [[PWY-7340]]
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* [[PWY-7656]]
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* [[PWY-7291]]
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* [[PWY-735]]
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* [[PWY-7606]]
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* [[PWY-7338]]
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* [[PWY-7094]]
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* [[PWY-6837]]
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* [[PWY66-391]]
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* [[PWY-5136]]
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* [[PWY-7726]]
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* [[PWY-7007]]
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* [[PWY-7337]]
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* [[PWY-7288]]
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* [[PWY-7654]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2300}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28042 28042]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=24}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00209 R00209]
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{{#set: centisome position=0.8163265    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ACOA120or|ACOA140or|ACOA160or|ACOA40or|ACOA80or|ACYL-COA-OXIDASE-RXN|LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN|RXN-10696|RXN-10706|RXN-10707|RXN-11026|RXN-11734|RXN-12518|RXN-12669|RXN-13451|RXN-13615|RXN-14131|RXN-14193|RXN-14229|RXN-14262|RXN-14278|RXN-14576|RXN-14771|RXN-14775|RXN-14785|RXN-14789|RXN-14796|RXN-16134|RXN-16540|RXN-16557|RXN-17113}}
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{{#set: ec number=EC-1.2.1}}
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{{#set: pathway associated=PWY-6920|PWY-7340|PWY-7656|PWY-7291|PWY-735|PWY-7606|PWY-7338|PWY-7094|PWY-6837|PWY66-391|PWY-5136|PWY-7726|PWY-7007|PWY-7337|PWY-7288|PWY-7654}}
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{{#set: gene associated=Tiso_gene_17539|Tiso_gene_19780|Tiso_gene_7519|Tiso_gene_9330|Tiso_gene_6983|Tiso_gene_2515|Tiso_gene_2693}}
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{{#set: in pathway=PWY-7218|PWY-7384|PWY-6886|PWY-5537|GLYCOLYSIS-TCA-GLYOX-BYPASS|PWY-5482}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
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Latest revision as of 19:33, 21 March 2018

Gene Tiso_gene_18566

  • right end position:
    • 2300
  • transcription direction:
    • POSITIVE
  • left end position:
    • 24
  • centisome position:
    • 0.8163265
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18566&oldid=42365"