Difference between revisions of "Tiso gene 9394"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: **...")
(Created page with "Category:Gene == Gene Tiso_gene_9394 == * Synonym(s): == Reactions associated == * Reaction: ACYLCOASYN-RXN ** Source: annotation-in-silico_annotation *** Assignm...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN] ==
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== Gene Tiso_gene_9394 ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/5.4.99.17 EC-5.4.99.17]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACYLCOASYN-RXN]]
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** 1 [[SQUALENE]][c] '''=>''' 1 [[HOP-2229-ENE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 squalene[c] '''=>''' 1 hop-22(29)-ene[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[FACOAL18111Z]]
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* [[Tiso_gene_12198]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[LINOLENOYL-RXN]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
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** Source: [[annotation-experimental_annotation]]
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** '''1''' reactions found over '''14''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-6098]], diploterol and cycloartenol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098]
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** Source: [[orthology-esiliculosus]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* Reaction: [[LNLCCOAL]]
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== Reconstruction information  ==
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** Source: [[orthology-creinhardtii]]
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* Category: [[annotation]]
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* Reaction: [[LNLNCACOAL]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[R223-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-12184]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12978]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-13290]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-13614]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-16380]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-16389]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16393]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16401]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16402]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16415]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16418]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7904]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9623]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-9644]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9673]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN0-7238]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-7239]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-7248]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN66-469]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN66-477]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN66-480]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN66-483]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN66-484]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[TRANS-RXN0-623]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-6920]]
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* [[P221-PWY]]
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* [[PWY-321]]
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* [[PWY-5972]]
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* [[PWY-5971]]
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* [[PWY-7033]]
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* [[PWY-5136]]
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* [[PWY66-389]]
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* [[PWY-7288]]
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* [[PWY-6733]]
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* [[PWY-7094]]
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* [[PWY66-391]]
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* [[FAO-PWY]]
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* [[PWY-1121]]
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* [[PWY-6873]]
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* [[PWY-5147]]
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* [[PWY-5143]]
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* [[PWY-5885]]
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* [[PWY-7724]]
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* [[PWY-6001]]
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* [[PWY-6000]]
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* [[PWY-7049]]
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* [[PWY66-387]]
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* [[PWY-5989]]
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* [[PWY-6803]]
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* [[PWY66-388]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: reaction associated=ACYLCOASYN-RXN|FACOAL18111Z|LINOLENOYL-RXN|LNLCCOAL|LNLNCACOAL|R223-RXN|RXN-12184|RXN-12978|RXN-13290|RXN-13614|RXN-16380|RXN-16389|RXN-16393|RXN-16401|RXN-16402|RXN-16415|RXN-16418|RXN-7904|RXN-9623|RXN-9644|RXN-9673|RXN0-7238|RXN0-7239|RXN0-7248|RXN66-469|RXN66-477|RXN66-480|RXN66-483|RXN66-484|TRANS-RXN0-623}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17637 17637]
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{{#set: pathway associated=PWY-6920|P221-PWY|PWY-321|PWY-5972|PWY-5971|PWY-7033|PWY-5136|PWY66-389|PWY-7288|PWY-6733|PWY-7094|PWY66-391|FAO-PWY|PWY-1121|PWY-6873|PWY-5147|PWY-5143|PWY-5885|PWY-7724|PWY-6001|PWY-6000|PWY-7049|PWY66-387|PWY-5989|PWY-6803|PWY66-388}}
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R07322 R07322]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-5.4.99.17}}
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{{#set: gene associated=Tiso_gene_12198}}
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{{#set: in pathway=PWY-7072|PWY-6098}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:33, 21 March 2018

Gene Tiso_gene_9394

  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9394&oldid=42367"