Difference between revisions of "5.4.99.17-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7205 PWY-7205] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: **...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7205 PWY-7205] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* common name:
 
* common name:
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** CMP phosphorylation
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/5.4.99.17 EC-5.4.99.17]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
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* [[CDPKIN-RXN]]
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** 1 [[SQUALENE]][c] '''=>''' 1 [[HOP-2229-ENE]][c]
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** 6 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_17272]]
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** 1 squalene[c] '''=>''' 1 hop-22(29)-ene[c]
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*** [[Tiso_gene_9290]]
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*** [[Tiso_gene_18224]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_17271]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_195]]
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* Gene: [[Tiso_gene_12198]]
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*** [[Tiso_gene_16529]]
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** Source: [[annotation-in-silico_annotation]]
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** 6 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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*** [[orthology-esiliculosus]]
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* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
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*** [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''14''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[PWY-6098]], diploterol and cycloartenol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098]
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*** [[orthology-synechocystis]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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*** [[manual-primary_network]]
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== Reconstruction information  ==
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* [[RXN-11832]]
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* Category: [[annotation]]
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** 4 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_19734]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_14116]]
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*** [[Tiso_gene_9739]]
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*** [[Tiso_gene_2386]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7205 PWY-7205]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17637 17637]
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{{#set: taxonomic range=TAX-2759}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07322 R07322]
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{{#set: taxonomic range=TAX-2157}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=CMP phosphorylation}}
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{{#set: common name=ORF}}
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{{#set: reaction found=2}}
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{{#set: ec number=EC-5.4.99.17}}
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{{#set: total reaction=2}}
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{{#set: gene associated=Tiso_gene_12198}}
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{{#set: completion rate=100.0}}
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{{#set: in pathway=PWY-7072|PWY-6098}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:33, 21 March 2018

Reaction 5.4.99.17-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 squalene[c] => 1 hop-22(29)-ene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7072, hopanoid biosynthesis (bacteria): PWY-7072
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-6098, diploterol and cycloartenol biosynthesis: PWY-6098
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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