Difference between revisions of "RXN-8042"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_12322 == * Synonym(s): == Reactions associated == * UDP-GLUCURONATE-4-EPIMERASE-RXN ** pantograph-creinhardtii == Pathways ass...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] == * direction: ** LEFT-TO-RIGHT * common name: ** carotene_isomerase ** caroten...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_12322 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] ==
 +
* direction:
 +
** LEFT-TO-RIGHT
 +
* common name:
 +
** carotene_isomerase
 +
** carotenoid_isomerase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.2.1.13 EC-5.2.1.13]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[UDP-GLUCURONATE-4-EPIMERASE-RXN]]
+
* With identifiers:
−
** [[pantograph]]-[[creinhardtii]]
+
** 1 [[CPD-7496]][c] '''=>''' 1 [[CPD1F-114]][c]
−
== Pathways associated ==
+
* With common name(s):
−
* [[PWY-4861]]
+
** 1 prolycopene[c] '''=>''' 1 all-trans-lycopene[c]
−
* [[PWY-6415]]
+
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_13369]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_13367]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_917]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_916]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_15802]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_915]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways ==
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: reaction associated=UDP-GLUCURONATE-4-EPIMERASE-RXN}}
+
* RHEA:
−
{{#set: pathway associated=PWY-4861|PWY-6415}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30974 30974]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07512 R07512]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=carotene_isomerase}}
 +
{{#set: common name=carotenoid_isomerase}}
 +
{{#set: ec number=EC-5.2.1.13}}
 +
{{#set: gene associated=Tiso_gene_13369|Tiso_gene_13367|Tiso_gene_917|Tiso_gene_916|Tiso_gene_15802|Tiso_gene_915}}
 +
{{#set: in pathway=PWY-6475}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:34, 21 March 2018

Reaction RXN-8042

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carotene_isomerase
    • carotenoid_isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 prolycopene[c] => 1 all-trans-lycopene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8042&oldid=42453"