Difference between revisions of "RXN-8042"

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(Created page with "Category:Gene == Gene Tiso_gene_14262 == * left end position: ** 47 * transcription direction: ** POSITIVE * right end position: ** 2617 * centisome position: ** 0.8172492...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] == * direction: ** LEFT-TO-RIGHT * common name: ** carotene_isomerase ** caroten...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_14262 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] ==
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* left end position:
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* direction:
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** 47
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** carotene_isomerase
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* right end position:
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** carotenoid_isomerase
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** 2617
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/5.2.1.13 EC-5.2.1.13]
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** 0.8172492   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1.1.1.211-RXN]]
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* With identifiers:
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** experimental_annotation
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** 1 [[CPD-7496]][c] '''=>''' 1 [[CPD1F-114]][c]
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***automated-name-match
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* With common name(s):
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* [[ENOYL-COA-HYDRAT-RXN]]
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** 1 prolycopene[c] '''=>''' 1 all-trans-lycopene[c]
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** [[pantograph]]-[[esiliculosus]]
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* [[METHYLACYLYLCOA-HYDROXY-RXN]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[OHACYL-COA-DEHYDROG-RXN]]
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* Gene: [[Tiso_gene_13369]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: AUTOMATED-NAME-MATCH
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** experimental_annotation
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* Gene: [[Tiso_gene_13367]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-10697]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_917]]
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* [[RXN-10698]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: AUTOMATED-NAME-MATCH
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***ec-number
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* Gene: [[Tiso_gene_916]]
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** experimental_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-10702]]
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* Gene: [[Tiso_gene_15802]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: AUTOMATED-NAME-MATCH
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** experimental_annotation
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* Gene: [[Tiso_gene_915]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-10703]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** in-silico_annotation
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== Pathways ==
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***ec-number
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** experimental_annotation
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** '''8''' reactions found over '''8''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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* [[RXN-10704]]
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* Category: [[annotation]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-10705]]
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*** Tool: [[pathwaytools]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-11244]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-11245]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-11662]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-12490]]
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** in-silico_annotation
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−
***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-12570]]
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** in-silico_annotation
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−
***ec-number
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** experimental_annotation
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−
***ec-number
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* [[RXN-12705]]
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−
** in-silico_annotation
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−
***ec-number
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** experimental_annotation
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−
***ec-number
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* [[RXN-12750]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-13616]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-14266]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-14271]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-14276]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-14393]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-16133]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-16559]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-17777]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-17781]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-17786]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-17790]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-17793]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-17794]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-17797]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-17798]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-7838]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-905]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN0-2044]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN0-6513]]
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** [[pantograph]]-[[esiliculosus]]
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* [[TIGLYLCOA-HYDROXY-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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−
== Pathways associated ==
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* [[PWY-6920]]
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* [[P162-PWY]]
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* [[PWY-5177]]
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* [[PWY-6583]]
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* [[VALDEG-PWY]]
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* [[PWY-6883]]
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* [[PWY-5138]]
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* [[PWY-5136]]
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* [[PWY-7778]]
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* [[PWY-7779]]
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* [[PWY-7094]]
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* [[PWY-7654]]
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* [[PWY66-391]]
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* [[PWY-5789]]
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* [[FAO-PWY]]
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* [[CENTFERM-PWY]]
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−
* [[PWY-6945]]
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* [[PWY0-321]]
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* [[PWY-5109]]
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* [[ILEUDEG-PWY]]
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* [[PWY-7007]]
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* [[PWY-6435]]
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* [[PWY-7656]]
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−
* [[PWY-7046]]
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* [[PWY-7216]]
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* [[PWY-1361]]
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* [[PWY-6946]]
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* [[PWY-81]]
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* [[PWY-6944]]
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* [[PWY-735]]
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−
* [[PWY-7401]]
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−
* [[PWY-6863]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=47}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30974 30974]
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{{#set: right end position=2617}}
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* LIGAND-RXN:
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{{#set: centisome position=0.8172492    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R07512 R07512]
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{{#set: reaction associated=1.1.1.211-RXN|ENOYL-COA-HYDRAT-RXN|METHYLACYLYLCOA-HYDROXY-RXN|OHACYL-COA-DEHYDROG-RXN|RXN-10697|RXN-10698|RXN-10702|RXN-10703|RXN-10704|RXN-10705|RXN-11244|RXN-11245|RXN-11662|RXN-12490|RXN-12570|RXN-12705|RXN-12750|RXN-13616|RXN-14266|RXN-14271|RXN-14276|RXN-14393|RXN-16133|RXN-16559|RXN-17777|RXN-17781|RXN-17786|RXN-17790|RXN-17793|RXN-17794|RXN-17797|RXN-17798|RXN-7838|RXN-905|RXN0-2044|RXN0-6513|TIGLYLCOA-HYDROXY-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: pathway associated=PWY-6920|P162-PWY|PWY-5177|PWY-6583|VALDEG-PWY|PWY-6883|PWY-5138|PWY-5136|PWY-7778|PWY-7779|PWY-7094|PWY-7654|PWY66-391|PWY-5789|FAO-PWY|CENTFERM-PWY|PWY-6945|PWY0-321|PWY-5109|ILEUDEG-PWY|PWY-7007|PWY-6435|PWY-7656|PWY-7046|PWY-7216|PWY-1361|PWY-6946|PWY-81|PWY-6944|PWY-735|PWY-7401|PWY-6863}}
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{{#set: common name=carotene_isomerase}}
 +
{{#set: common name=carotenoid_isomerase}}
 +
{{#set: ec number=EC-5.2.1.13}}
 +
{{#set: gene associated=Tiso_gene_13369|Tiso_gene_13367|Tiso_gene_917|Tiso_gene_916|Tiso_gene_15802|Tiso_gene_915}}
 +
{{#set: in pathway=PWY-6475}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:34, 21 March 2018

Reaction RXN-8042

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carotene_isomerase
    • carotenoid_isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 prolycopene[c] => 1 all-trans-lycopene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8042&oldid=42453"