Difference between revisions of "Tiso gene 10646"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [h...")
(Created page with "Category:Gene == Gene Tiso_gene_10646 == * right end position: ** 7641 * transcription direction: ** POSITIVE * left end position: ** 5934 * centisome position: ** 70.7439...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] ==
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== Gene Tiso_gene_10646 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 7641
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/5.3.1.6 EC-5.3.1.6]
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** 5934
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* centisome position:
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** 70.74392   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.2.1.13-RXN]]
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** 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 D-ribose 5-phosphate[c] '''<=>''' 1 D-ribulose 5-phosphate[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[GAPDHSYNEC-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_18217]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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* Reaction: [[GAPOXNPHOSPHN-RXN]]
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***EC-NUMBER
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
 
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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* Category: [[manual]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[manual-primary_network]]
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* Reaction: [[TRIOSEPISOMERIZATION-RXN]]
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* Category: [[annotation]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-1042]]
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* [[P341-PWY]]
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* [[PWY66-399]]
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* [[PWY66-373]]
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* [[GLUCONEO-PWY]]
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* [[GLYCOLYSIS]]
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* [[PWY-6901]]
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* [[SUCSYN-PWY]]
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* [[P124-PWY]]
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* [[PWY-6142]]
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* [[CALVIN-PWY]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-5484]]
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* [[P185-PWY]]
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* [[P122-PWY]]
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* [[PWY-7003]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=7641}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14657 14657]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5934}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
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{{#set: centisome position=70.74392    }}
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* UNIPROT:
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{{#set: reaction associated=1.2.1.13-RXN|GAPDHSYNEC-RXN|GAPOXNPHOSPHN-RXN|TRIOSEPISOMERIZATION-RXN}}
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** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
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{{#set: pathway associated=PWY-1042|P341-PWY|PWY66-399|PWY66-373|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|SUCSYN-PWY|P124-PWY|PWY-6142|CALVIN-PWY|ANAGLYCOLYSIS-PWY|PWY-5484|P185-PWY|P122-PWY|PWY-7003}}
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** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
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** [http://www.uniprot.org/uniprot/P44725 P44725]
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** [http://www.uniprot.org/uniprot/Q58998 Q58998]
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** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
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** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
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** [http://www.uniprot.org/uniprot/P37351 P37351]
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** [http://www.uniprot.org/uniprot/P74234 P74234]
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** [http://www.uniprot.org/uniprot/Q55766 Q55766]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-5.3.1.6}}
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{{#set: gene associated=Tiso_gene_18217}}
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{{#set: in pathway=P124-PWY|CALVIN-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:35, 21 March 2018

Gene Tiso_gene_10646

  • right end position:
    • 7641
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5934
  • centisome position:
    • 70.74392
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10646&oldid=42524"