Difference between revisions of "RXN-1321"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=T...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1321 RXN-1321] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoxygenase * ec number: **...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1321 RXN-1321] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
 
* common name:
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** 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)
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** lipoxygenase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.13.11.12 EC-1.13.11.12]
 
* Synonym(s):
 
* Synonym(s):
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** light-dependent aerobic 3,8-divinyl-chlorophyllide a biosynthesis I
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''9''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[PROTOPORGENOXI-RXN]]
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** 1 [[LINOLENIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-725]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_11986]]
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** 1 α-linolenate[c] '''+''' 1 oxygen[c] '''=>''' 1 13(S)-HPOTE[c]
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*** [[Tiso_gene_15401]]
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** 6 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4463]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-synechocystis]]
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== Pathways  ==
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*** [[manual-primary_network]]
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* [[PWY-5410]], traumatin and (Z)-3-hexen-1-yl acetate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5410 PWY-5410]
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* [[RXN-5282]]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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** 0 associated gene:
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* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
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** 1 reconstruction source(s) associated:
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** '''15''' reactions found over '''19''' reactions in the full pathway
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*** [[manual-primary_network]]
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== Reconstruction information  ==
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* [[RXN-5283]]
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* Category: [[annotation]]
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** 0 associated gene:
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** Source: [[annotation-in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[manual-primary_network]]
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* [[RXN-5284]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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* [[RXN-5285]]
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** 3 associated gene(s):
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*** [[Tiso_gene_17141]]
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*** [[Tiso_gene_19518]]
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*** [[Tiso_gene_10077]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19451]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-1461]]
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** 5 associated gene(s):
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*** [[Tiso_gene_2247]]
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*** [[Tiso_gene_2246]]
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*** [[Tiso_gene_13364]]
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*** [[Tiso_gene_13365]]
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*** [[Tiso_gene_3671]]
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** 7 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN1F-20]]
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** 3 associated gene(s):
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*** [[Tiso_gene_9870]]
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*** [[Tiso_gene_11960]]
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*** [[Tiso_gene_5993]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[UROGENDECARBOX-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18743]]
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*** [[Tiso_gene_19684]]
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*** [[Tiso_gene_18744]]
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*** [[Tiso_gene_5173]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2763}}
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* RHEA:
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{{#set: taxonomic range=TAX-33682}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34495 34495]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07869 R07869]
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{{#set: common name=3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=light-dependent aerobic 3,8-divinyl-chlorophyllide a biosynthesis I}}
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{{#set: common name=lipoxygenase}}
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{{#set: reaction found=9}}
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{{#set: ec number=EC-1.13.11.12}}
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{{#set: total reaction=9}}
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{{#set: gene associated=Tiso_gene_4463}}
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{{#set: completion rate=100.0}}
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{{#set: in pathway=PWY-5410|PWY-735}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:35, 21 March 2018

Reaction RXN-1321

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • lipoxygenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5410, traumatin and (Z)-3-hexen-1-yl acetate biosynthesis: PWY-5410
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-735, jasmonic acid biosynthesis: PWY-735
    • 15 reactions found over 19 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-1321&oldid=42533"