Difference between revisions of "Tiso gene 9908"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIMETHUROPORDEHYDROG-RXN DIMETHUROPORDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Gene == Gene Tiso_gene_9908 == * right end position: ** 8782 * transcription direction: ** NEGATIVE * left end position: ** 6235 * centisome position: ** 69.38571...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIMETHUROPORDEHYDROG-RXN DIMETHUROPORDEHYDROG-RXN] ==
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== Gene Tiso_gene_9908 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8782
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* common name:
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* transcription direction:
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** at5g40850_mhk7_8
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** NEGATIVE
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** ORF
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* left end position:
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* ec number:
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** 6235
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** [http://enzyme.expasy.org/EC/1.3.1.76 EC-1.3.1.76]
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* centisome position:
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** 69.38571   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[6.3.5.6-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[SIROHYDROCHLORIN]][c]
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** Source: [[orthology-esiliculosus]]
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* With common name(s):
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* Reaction: [[ASPARAGINE--TRNA-LIGASE-RXN]]
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** 1 NAD+[c] '''+''' 1 precorrin-2[c] '''=>''' 2 H+[c] '''+''' 1 NADH[c] '''+''' 1 sirohydrochlorin[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY490-4]]
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* Gene: [[Tiso_gene_8614]]
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* [[TRNA-CHARGING-PWY]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_15852]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7377 PWY-7377]
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** '''3''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8782}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15613 15613]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=6235}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03947 R03947]
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{{#set: centisome position=69.38571    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=6.3.5.6-RXN|ASPARAGINE--TRNA-LIGASE-RXN}}
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{{#set: common name=at5g40850_mhk7_8}}
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{{#set: pathway associated=PWY490-4|TRNA-CHARGING-PWY}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.3.1.76}}
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{{#set: gene associated=Tiso_gene_8614|Tiso_gene_15852}}
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{{#set: in pathway=PWY-7377|PWY-5194}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:36, 21 March 2018

Gene Tiso_gene_9908

  • right end position:
    • 8782
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 6235
  • centisome position:
    • 69.38571
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9908&oldid=42641"