Difference between revisions of "PWY-5531"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7741 RXN-7741] == * direction: ** LEFT-TO-RIGHT * common name: ** red_chlorophyll_catabolite_re...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7741 RXN-7741] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** red_chlorophyll_catabolite_reductase
+
** 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.3.7.12 EC-1.3.7.12]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''4''' reactions found over '''9''' reactions in the full pathway
−
** 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[CPD-7063]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[CPD-7064]][c]
+
* [[HEMN-RXN]]
−
* With common name(s):
+
** 5 associated gene(s):
−
** 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''+''' 1 red chlorophyll catabolite[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 primary fluorescent chlorophyll catabolite[c]
+
*** [[Tiso_gene_5577]]
−
 
+
*** [[Tiso_gene_18066]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_13365]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_13364]]
−
* [[Tiso_gene_17975]]
+
*** [[Tiso_gene_4004]]
−
** IN-SILICO_ANNOTATION
+
** 4 reconstruction source(s) associated:
−
***AUTOMATED-NAME-MATCH
+
*** [[orthology-athaliana]]
−
== Pathways  ==
+
*** [[annotation-in-silico_annotation]]
−
* [[PWY-5098]], chlorophyll a degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5098 PWY-5098]
+
*** [[orthology-synechocystis]]
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
*** [[orthology-esiliculosus]]
−
* [[PWY-6927]], chlorophyll a degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6927 PWY-6927]
+
* [[RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN]]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** 1 associated gene(s):
−
== Reconstruction information  ==
+
*** [[Tiso_gene_19451]]
−
* [[annotation]]:
+
** 5 reconstruction source(s) associated:
−
** [[pathwaytools]]:
+
*** [[annotation-experimental_annotation]]
−
*** [[in-silico_annotation]]
+
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN1F-20]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_11960]]
 +
*** [[Tiso_gene_5993]]
 +
*** [[Tiso_gene_9870]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-esiliculosus]]
 +
* [[UROGENDECARBOX-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_18743]]
 +
*** [[Tiso_gene_19684]]
 +
*** [[Tiso_gene_18744]]
 +
*** [[Tiso_gene_5173]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17485 RXN-17485]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8797 RXN-8797]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8798 RXN-8798]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8799 RXN-8799]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6259 RXN0-6259]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24755 24755]
+
{{#set: common name=3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)}}
−
* LIGAND-RXN:
+
{{#set: reaction found=4}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R09032 R09032]
+
{{#set: total reaction=9}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: completion rate=44.0}}
−
{{#set: common name=red_chlorophyll_catabolite_reductase}}
+
−
{{#set: ec number=EC-1.3.7.12}}
+
−
{{#set: gene associated=Tiso_gene_17975}}
+
−
{{#set: in pathway=PWY-5098|PWY-6927}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:36, 21 March 2018

Pathway PWY-5531

  • taxonomic range:
  • common name:
    • 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
  • Synonym(s):

Reaction(s) found

4 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5531&oldid=42670"