Difference between revisions of "3.4.21.4-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DELTA3-ISOPENTENYL-PP DELTA3-ISOPENTENYL-PP] == * smiles: ** C=C(C)CCOP([O-])(=O)OP([O-])(=O)[O...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.21.4-RXN 3.4.21.4-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** trypsin_family ** try...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DELTA3-ISOPENTENYL-PP DELTA3-ISOPENTENYL-PP] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.21.4-RXN 3.4.21.4-RXN] ==
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* smiles:
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* direction:
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** C=C(C)CCOP([O-])(=O)OP([O-])(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
+
−
** InChIKey=NUHSROFQTUXZQQ-UHFFFAOYSA-K
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* common name:
 
* common name:
−
** isopentenyl diphosphate
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** trypsin_family
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* molecular weight:
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** trypsin
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** 243.069   
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* ec number:
 +
** [http://enzyme.expasy.org/EC/3.4.21.4 EC-3.4.21.4]
 
* Synonym(s):
 
* Synonym(s):
−
** isopentenyl-pp
 
−
** isopentenyl pyrophosphate
 
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** IPP
 
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** δ(3)-isopentenyl-PP
 
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** Δ3-isopentenyl-PP
 
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** 3-methylbut-3-enyl diphosphate
 
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** 3-methylbut-3-enyl pyrophosphate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[FPPSYN-RXN]]
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* With identifiers:
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* [[TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN]]
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** 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
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* [[GGPS]]
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* With common name(s):
−
* [[GPPS]]
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** 1 a protein[c] '''+''' 1 H2O[c] '''=>''' 1 a peptide[c]
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* [[RXN-11486]]
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* [[RXN-8999]]
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== Genes associated with this reaction  ==
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* [[FARNESYLTRANSTRANSFERASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) known to produce the compound ==
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* Gene: [[Tiso_gene_17883]]
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* [[DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN]]
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** Source: [[orthology-esiliculosus]]
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* [[ISPH2-RXN]]
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* Gene: [[Tiso_gene_4147]]
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* [[IDS1]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) of unknown directionality ==
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[IPPISOM-RXN]]
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* Gene: [[Tiso_gene_1997]]
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* [[RXN0-5180]]
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** Source: [[orthology-esiliculosus]]
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* [[GPPSYN-RXN]]
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* Gene: [[Tiso_gene_1341]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_20549]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13684]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13074]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_2777]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19324]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_1761]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4842]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8820]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_12875]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* METABOLIGHTS : MTBLC128769
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* UNIPROT:
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P07477 P07477]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15983957 15983957]
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** [http://www.uniprot.org/uniprot/P08426 P08426]
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* HMDB : HMDB01347
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** [http://www.uniprot.org/uniprot/P35051 P35051]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P19799 P19799]
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** [http://www.genome.jp/dbget-bin/www_bget?C00129 C00129]
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** [http://www.uniprot.org/uniprot/Q7M434 Q7M434]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/Q7M435 Q7M435]
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** [http://www.chemspider.com/Chemical-Structure.13115335.html 13115335]
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** [http://www.uniprot.org/uniprot/Q7M390 Q7M390]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q7LZP8 Q7LZP8]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=128769 128769]
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** [http://www.uniprot.org/uniprot/Q7LZF8 Q7LZF8]
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* BIGG : ipdp
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** [http://www.uniprot.org/uniprot/Q7M433 Q7M433]
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{{#set: smiles=C=C(C)CCOP([O-])(=O)OP([O-])(=O)[O-]}}
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** [http://www.uniprot.org/uniprot/P07146 P07146]
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{{#set: inchi key=InChIKey=NUHSROFQTUXZQQ-UHFFFAOYSA-K}}
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** [http://www.uniprot.org/uniprot/P07478 P07478]
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{{#set: common name=isopentenyl diphosphate}}
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** [http://www.uniprot.org/uniprot/Q7M3N1 Q7M3N1]
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{{#set: molecular weight=243.069    }}
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** [http://www.uniprot.org/uniprot/Q7M432 Q7M432]
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{{#set: common name=isopentenyl-pp|isopentenyl pyrophosphate|IPP|δ(3)-isopentenyl-PP|Δ3-isopentenyl-PP|3-methylbut-3-enyl diphosphate|3-methylbut-3-enyl pyrophosphate}}
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** [http://www.uniprot.org/uniprot/P32821 P32821]
−
{{#set: consumed by=FPPSYN-RXN|TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN|GGPS|GPPS|RXN-11486|RXN-8999|FARNESYLTRANSTRANSFERASE-RXN}}
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** [http://www.uniprot.org/uniprot/P32822 P32822]
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{{#set: produced by=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN|ISPH2-RXN|IDS1}}
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** [http://www.uniprot.org/uniprot/P12788 P12788]
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{{#set: consumed or produced by=IPPISOM-RXN|RXN0-5180|GPPSYN-RXN}}
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** [http://www.uniprot.org/uniprot/P35050 P35050]
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** [http://www.uniprot.org/uniprot/Q29463 Q29463]
 +
** [http://www.uniprot.org/uniprot/P35034 P35034]
 +
** [http://www.uniprot.org/uniprot/P35031 P35031]
 +
** [http://www.uniprot.org/uniprot/P35032 P35032]
 +
** [http://www.uniprot.org/uniprot/P35033 P35033]
 +
** [http://www.uniprot.org/uniprot/P35030 P35030]
 +
** [http://www.uniprot.org/uniprot/P35035 P35035]
 +
** [http://www.uniprot.org/uniprot/P35036 P35036]
 +
** [http://www.uniprot.org/uniprot/P16049 P16049]
 +
** [http://www.uniprot.org/uniprot/Q91041 Q91041]
 +
** [http://www.uniprot.org/uniprot/P35038 P35038]
 +
** [http://www.uniprot.org/uniprot/P35041 P35041]
 +
** [http://www.uniprot.org/uniprot/P35037 P35037]
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** [http://www.uniprot.org/uniprot/Q92099 Q92099]
 +
** [http://www.uniprot.org/uniprot/Q27761 Q27761]
 +
** [http://www.uniprot.org/uniprot/Q90629 Q90629]
 +
** [http://www.uniprot.org/uniprot/Q90628 Q90628]
 +
** [http://www.uniprot.org/uniprot/Q90627 Q90627]
 +
** [http://www.uniprot.org/uniprot/Q7M436 Q7M436]
 +
** [http://www.uniprot.org/uniprot/P35045 P35045]
 +
** [http://www.uniprot.org/uniprot/P00765 P00765]
 +
** [http://www.uniprot.org/uniprot/P00764 P00764]
 +
** [http://www.uniprot.org/uniprot/P06872 P06872]
 +
** [http://www.uniprot.org/uniprot/P06871 P06871]
 +
** [http://www.uniprot.org/uniprot/P00761 P00761]
 +
** [http://www.uniprot.org/uniprot/P00762 P00762]
 +
** [http://www.uniprot.org/uniprot/P00763 P00763]
 +
** [http://www.uniprot.org/uniprot/P00775 P00775]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=trypsin_family}}
 +
{{#set: common name=trypsin}}
 +
{{#set: ec number=EC-3.4.21.4}}
 +
{{#set: gene associated=Tiso_gene_17883|Tiso_gene_4147|Tiso_gene_1997|Tiso_gene_1341|Tiso_gene_20549|Tiso_gene_13684|Tiso_gene_13074|Tiso_gene_2777|Tiso_gene_19324|Tiso_gene_1761|Tiso_gene_4842|Tiso_gene_8820|Tiso_gene_12875}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:37, 21 March 2018

Reaction 3.4.21.4-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • trypsin_family
    • trypsin
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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