Difference between revisions of "Tiso gene 6599"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Gene == Gene Tiso_gene_6599 == * right end position: ** 16553 * transcription direction: ** NEGATIVE * left end position: ** 12080 * centisome position: ** 72.184...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] ==
+
== Gene Tiso_gene_6599 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 16553
−
* common name:
+
* transcription direction:
−
** aspartyl-trna_synthetase
+
** NEGATIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/6.1.1.12 EC-6.1.1.12]
+
** 12080
 +
* centisome position:
 +
** 72.184044   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ATPASE-RXN]]
−
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[ASP-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 L-aspartate[c] '''+''' 1 ATP[c] '''+''' 1 tRNAasp[c] '''=>''' 1 AMP[c] '''+''' 1 an L-aspartyl-[tRNAasp][c] '''+''' 1 diphosphate[c]
+
== Pathways associated ==
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_17185]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_7126]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13081]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways ==
+
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=16553}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19649 19649]
+
{{#set: transcription direction=NEGATIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=12080}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
+
{{#set: centisome position=72.184044    }}
−
* UNIPROT:
+
{{#set: reaction associated=ATPASE-RXN}}
−
** [http://www.uniprot.org/uniprot/P56459 P56459]
+
−
** [http://www.uniprot.org/uniprot/O26328 O26328]
+
−
** [http://www.uniprot.org/uniprot/O83950 O83950]
+
−
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
+
−
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
+
−
** [http://www.uniprot.org/uniprot/O32038 O32038]
+
−
** [http://www.uniprot.org/uniprot/O67589 O67589]
+
−
** [http://www.uniprot.org/uniprot/P43817 P43817]
+
−
** [http://www.uniprot.org/uniprot/O51402 O51402]
+
−
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
+
−
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
+
−
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
+
−
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
+
−
** [http://www.uniprot.org/uniprot/O58776 O58776]
+
−
** [http://www.uniprot.org/uniprot/O84546 O84546]
+
−
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
+
−
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
+
−
** [http://www.uniprot.org/uniprot/P47282 P47282]
+
−
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
+
−
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
+
−
** [http://www.uniprot.org/uniprot/P36429 P36429]
+
−
** [http://www.uniprot.org/uniprot/P75068 P75068]
+
−
** [http://www.uniprot.org/uniprot/P73851 P73851]
+
−
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
+
−
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
+
−
** [http://www.uniprot.org/uniprot/P04802 P04802]
+
−
** [http://www.uniprot.org/uniprot/P15179 P15179]
+
−
** [http://www.uniprot.org/uniprot/P21889 P21889]
+
−
** [http://www.uniprot.org/uniprot/P14868 P14868]
+
−
** [http://www.uniprot.org/uniprot/P15178 P15178]
+
−
** [http://www.uniprot.org/uniprot/O81892 O81892]
+
−
** [http://www.uniprot.org/uniprot/O74407 O74407]
+
−
** [http://www.uniprot.org/uniprot/O07683 O07683]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=aspartyl-trna_synthetase}}
+
−
{{#set: ec number=EC-6.1.1.12}}
+
−
{{#set: gene associated=Tiso_gene_17185|Tiso_gene_7126|Tiso_gene_13081}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:37, 21 March 2018

Gene Tiso_gene_6599

  • right end position:
    • 16553
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 12080
  • centisome position:
    • 72.184044
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6599&oldid=42836"