Difference between revisions of "PWY-7180"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** thiamine_mon...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7180 PWY-7180] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7180 PWY-7180] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** ORF
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** 2'-deoxy-α-D-ribose 1-phosphate degradation
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** thiamine_monophosphate_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''3''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[THIAMINE-P]][c] '''+''' 1 [[PPI]][c]
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* [[ACETALD-DEHYDROG-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 H+[c] '''+''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 4-methyl-5-(2-phosphooxyethyl)thiazole[c] '''=>''' 1 thiamine phosphate[c] '''+''' 1 diphosphate[c]
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*** [[Tiso_gene_7649]]
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*** [[Tiso_gene_2052]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_10320]]
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*** [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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== Reaction(s) not found ==
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=D-PPENTOMUT-RXN D-PPENTOMUT-RXN]
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* [[Tiso_gene_2159]]
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* [http://metacyc.org/META/NEW-IMAGE?object=DEOXYRIBOSE-P-ALD-RXN DEOXYRIBOSE-P-ALD-RXN]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2160]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6897]], thiamine salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6897 PWY-6897]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6908 PWY-6908]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22328 22328]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7180 PWY-7180]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223]
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{{#set: common name=2'-deoxy-α-D-ribose 1-phosphate degradation}}
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* UNIPROT:
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P41835 P41835]
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{{#set: total reaction=3}}
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** [http://www.uniprot.org/uniprot/P71350 P71350]
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{{#set: completion rate=33.0}}
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** [http://www.uniprot.org/uniprot/O25514 O25514]
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** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3]
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** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2]
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** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01]
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** [http://www.uniprot.org/uniprot/P30137 P30137]
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** [http://www.uniprot.org/uniprot/P39594 P39594]
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** [http://www.uniprot.org/uniprot/P40386 P40386]
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** [http://www.uniprot.org/uniprot/P72965 P72965]
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** [http://www.uniprot.org/uniprot/O48881 O48881]
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** [http://www.uniprot.org/uniprot/O34294 O34294]
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** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=thiamine_monophosphate_synthase}}
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{{#set: ec number=EC-2.5.1.3}}
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{{#set: gene associated=Tiso_gene_10320|Tiso_gene_2159|Tiso_gene_2160}}
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{{#set: in pathway=PWY-6897|PWY-7356|PWY-6908|PWY-7357}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:37, 21 March 2018

Pathway PWY-7180

  • taxonomic range:
  • common name:
    • 2'-deoxy-α-D-ribose 1-phosphate degradation
  • Synonym(s):

Reaction(s) found

1 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7180&oldid=42847"