Difference between revisions of "PWY-6527"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5286 RXN-5286] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5286 RXN-5286] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/1.3.1.75 EC-1.3.1.75]
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** stachyose degradation
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''7''' reactions in the full pathway
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** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DIVINYLCHLOROPHYLLIDE-A]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[CHLOROPHYLLIDE-A]][c]
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* [[GALACTOKIN-RXN]]
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* With common name(s):
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** 5 associated gene(s):
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** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 3,8-divinyl chlorophyllide a[c] '''=>''' 1 NADP+[c] '''+''' 1 chlorophyllide a[c]
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*** [[Tiso_gene_11795]]
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*** [[Tiso_gene_12191]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5041]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_10797]]
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* [[Tiso_gene_13868]]
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*** [[Tiso_gene_5042]]
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** [[pantograph]]-[[creinhardtii]]
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** 5 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-5526]], bacteriochlorophyll a biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5526 PWY-5526]
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*** [[orthology-athaliana]]
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** '''1''' reactions found over '''13''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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* [[PWY-7758]], bacteriochlorophyll d biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7758 PWY-7758]
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*** [[orthology-esiliculosus]]
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** '''1''' reactions found over '''14''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[PWY-7759]], bacteriochlorophyll c biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7759 PWY-7759]
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* [[GALACTURIDYLYLTRANS-RXN]]
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** '''1''' reactions found over '''18''' reactions in the full pathway
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** 1 associated gene(s):
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* [[PWY-5064]], chlorophyll a biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5064 PWY-5064]
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*** [[Tiso_gene_2435]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[PWY-5086]], chlorophyll a biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5086 PWY-5086]
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*** [[annotation-in-silico_annotation]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[PWY-7760]], bacteriochlorophyll e biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7760 PWY-7760]
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*** [[orthology-esiliculosus]]
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** '''1''' reactions found over '''26''' reactions in the full pathway
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* [[GLUC1PURIDYLTRANS-RXN]]
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== Reconstruction information  ==
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** 14 associated gene(s):
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* [[orthology]]:
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*** [[Tiso_gene_6459]]
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** [[pantograph]]:
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*** [[Tiso_gene_4816]]
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*** [[creinhardtii]]
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*** [[Tiso_gene_17531]]
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* [[manual]]:
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*** [[Tiso_gene_5879]]
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** [[primary_network]]
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*** [[Tiso_gene_17566]]
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*** [[Tiso_gene_16930]]
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*** [[Tiso_gene_14796]]
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*** [[Tiso_gene_9110]]
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*** [[Tiso_gene_13477]]
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*** [[Tiso_gene_7440]]
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*** [[Tiso_gene_11401]]
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*** [[Tiso_gene_6457]]
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*** [[Tiso_gene_6458]]
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*** [[Tiso_gene_7102]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-11501]]
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** 4 associated gene(s):
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*** [[Tiso_gene_16101]]
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*** [[Tiso_gene_4615]]
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*** [[Tiso_gene_8673]]
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*** [[Tiso_gene_3392]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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* [[RXN-11502]]
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** 4 associated gene(s):
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*** [[Tiso_gene_16101]]
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*** [[Tiso_gene_4615]]
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*** [[Tiso_gene_3392]]
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*** [[Tiso_gene_8673]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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* [[UDPGLUCEPIM-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_9823]]
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*** [[Tiso_gene_15395]]
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*** [[Tiso_gene_3236]]
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*** [[Tiso_gene_10797]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[UTPHEXPURIDYLYLTRANS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_9110]]
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*** [[Tiso_gene_6457]]
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*** [[Tiso_gene_6459]]
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*** [[Tiso_gene_14796]]
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*** [[Tiso_gene_17566]]
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*** [[Tiso_gene_6458]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14449 14449]
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{{#set: common name=stachyose degradation}}
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* LIGAND-RXN:
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{{#set: reaction found=7}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06272 R06272]
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{{#set: total reaction=7}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=100.0}}
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{{#set: ec number=EC-1.3.1.75}}
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{{#set: gene associated=Tiso_gene_13868}}
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{{#set: in pathway=PWY-5526|PWY-7758|PWY-7759|PWY-5064|PWY-5086|PWY-7760}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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Latest revision as of 19:38, 21 March 2018

Pathway PWY-6527

  • taxonomic range:
  • common name:
    • stachyose degradation
  • Synonym(s):

Reaction(s) found

7 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6527&oldid=42906"