Difference between revisions of "Tiso gene 11098"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYISOVALDEHYDRAT-RXN DIHYDROXYISOVALDEHYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * ec numb...")
 
(Created page with "Category:Gene == Gene Tiso_gene_11098 == * right end position: ** 7458 * transcription direction: ** POSITIVE * left end position: ** 3824 * centisome position: ** 47.5621...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROXYISOVALDEHYDRAT-RXN DIHYDROXYISOVALDEHYDRAT-RXN] ==
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== Gene Tiso_gene_11098 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 7458
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/4.2.1.9 EC-4.2.1.9]
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** POSITIVE
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* left end position:
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** 3824
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* centisome position:
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** 47.562187   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[CPD-13357]][c] '''=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 (2R)-2,3-dihydroxy-3-methylbutanoate[c] '''=>''' 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H2O[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* [[Tiso_gene_1563]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-12196]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
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*** Assignment: ec-number
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* Reaction: [[RXN0-5462]]
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* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7111 PWY-7111]
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** Source: [[annotation-in-silico_annotation]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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== Pathways associated ==
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* [[orthology]]:
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* [[PWY-7184]]
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** [[pantograph]]:
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* [[PWY-7198]]
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*** [[athaliana]]
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* [[PWY-6545]]
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*** [[esiliculosus]]
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* [[PWY-7210]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=7458}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04441 R04441]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: left end position=3824}}
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** [http://www.uniprot.org/uniprot/P55186 P55186]
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{{#set: centisome position=47.562187    }}
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** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/P05791 P05791]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
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** [http://www.uniprot.org/uniprot/P44851 P44851]
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** [http://www.uniprot.org/uniprot/Q02139 Q02139]
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** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
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** [http://www.uniprot.org/uniprot/P39522 P39522]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.2.1.9}}
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{{#set: gene associated=Tiso_gene_1563}}
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{{#set: in pathway=VALSYN-PWY|PWY-7111}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation}}
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Latest revision as of 19:38, 21 March 2018

Gene Tiso_gene_11098

  • right end position:
    • 7458
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3824
  • centisome position:
    • 47.562187
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_11098&oldid=42945"