Difference between revisions of "Tiso gene 2798"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9003 RXN-9003] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Gene == Gene Tiso_gene_2798 == * right end position: ** 11028 * transcription direction: ** POSITIVE * left end position: ** 9176 * centisome position: ** 42.1633...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9003 RXN-9003] ==
+
== Gene Tiso_gene_2798 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 11028
−
* ec number:
+
* transcription direction:
−
** [http://enzyme.expasy.org/EC/2.5.1.39 EC-2.5.1.39]
+
** POSITIVE
 +
* left end position:
 +
** 9176
 +
* centisome position:
 +
** 42.163303   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[3.6.3.50-RXN]]
−
** 1 [[4-hydroxybenzoate]][c] '''+''' 1 [[ALL-TRANS-HEXAPRENYL-DIPHOSPHATE]][c] '''=>''' 1 [[3-HEXAPRENYL-4-HYDROXYBENZOATE]][c] '''+''' 1 [[PPI]][c]
+
** Source: [[orthology-esiliculosus]]
−
* With common name(s):
+
* Reaction: [[ATPASE-RXN]]
−
** 1 4-hydroxybenzoate[c] '''+''' 1 all-trans-hexaprenyl diphosphate[c] '''=>''' 1 3-hexaprenyl-4-hydroxybenzoate[c] '''+''' 1 diphosphate[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_2848]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11582]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_18201]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_10317]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[PWY3O-19]], ubiquinol-6 biosynthesis from 4-hydroxybenzoate (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-19 PWY3O-19]
+
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-7235]], superpathway of ubiquinol-6 biosynthesis (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7235 PWY-7235]
+
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
+
* Reaction: [[ATPSYN-RXN]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pantograph]]
+
== Pathways associated ==
 +
* [[PWY-7219]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: right end position=11028}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05616 R05616]
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: left end position=9176}}
−
{{#set: ec number=EC-2.5.1.39}}
+
{{#set: centisome position=42.163303    }}
−
{{#set: gene associated=Tiso_gene_2848|Tiso_gene_11582|Tiso_gene_18201|Tiso_gene_10317}}
+
{{#set: reaction associated=3.6.3.50-RXN|ATPASE-RXN|ATPSYN-RXN}}
−
{{#set: in pathway=PWY3O-19|PWY-7235}}
+
{{#set: pathway associated=PWY-7219}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 20:39, 21 March 2018

Gene Tiso_gene_2798

  • right end position:
    • 11028
  • transcription direction:
    • POSITIVE
  • left end position:
    • 9176
  • centisome position:
    • 42.163303
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2798&oldid=42968"