Difference between revisions of "PWY-5686"

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(Created page with "Category:Gene == Gene Tiso_gene_11231 == * left end position: ** 358 * transcription direction: ** POSITIVE * right end position: ** 2753 * centisome position: ** 4.508248...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Pathway]]
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== Gene Tiso_gene_11231 ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686] ==
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* left end position:
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* taxonomic range:
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** 358
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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* transcription direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** POSITIVE
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* common name:
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* right end position:
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** UMP biosynthesis I
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** 2753
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* centisome position:
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** 4.5082483   
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* Synonym(s):
 
* Synonym(s):
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** uridine-5'-phosphate biosynthesis I
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** de novo biosynthesis of uridine-5'-phosphate I
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** de novo biosynthesis of uridine-5'-monophosphate I
  
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== Reactions associated ==
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== Reaction(s) found ==
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* [[ACETYLORNTRANSAM-RXN]]
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'''6''' reactions found over '''6''' reactions in the full pathway
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** in-silico_annotation
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* [[ASPCARBTRANS-RXN]]
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***automated-name-match
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** 1 associated gene(s):
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** [[pantograph]]-[[synechocystis]]
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*** [[Tiso_gene_13527]]
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** [[pantograph]]-[[esiliculosus]]
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** 7 reconstruction source(s) associated:
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** [[pantograph]]-[[creinhardtii]]
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*** [[annotation-experimental_annotation]]
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* [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]]
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*** [[orthology-esiliculosus]]
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** in-silico_annotation
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*** [[annotation-in-silico_annotation]]
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***ec-number
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*** [[orthology-athaliana]]
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** experimental_annotation
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*** [[orthology-synechocystis]]
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***ec-number
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*** [[manual-primary_network]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-creinhardtii]]
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* [[GABATRANSAM-RXN]]
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* [[CARBPSYN-RXN]]
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** [[pantograph]]-[[synechocystis]]
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** 3 associated gene(s):
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* [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]
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*** [[Tiso_gene_4976]]
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** [[pantograph]]-[[synechocystis]]
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*** [[Tiso_gene_4975]]
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* [[RXN-15007]]
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*** [[Tiso_gene_4685]]
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** in-silico_annotation
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** 4 reconstruction source(s) associated:
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***automated-name-match
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[manual-primary_network]]
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== Pathways associated ==
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*** [[annotation-experimental_annotation]]
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* [[PWY-4321]]
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*** [[orthology-esiliculosus]]
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* [[GLUTORN-PWY]]
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* [[DIHYDROOROT-RXN]]
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* [[PWY-6922]]
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** 1 associated gene(s):
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* [[GLUDEG-I-PWY]]
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*** [[Tiso_gene_15379]]
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* [[PWY-6344]]
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** 5 reconstruction source(s) associated:
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* [[PWY-3341]]
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*** [[annotation-in-silico_annotation]]
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* [[P181-PWY]]
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*** [[manual-primary_network]]
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* [[GLYSYN-ALA-PWY]]
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*** [[orthology-creinhardtii]]
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* [[ARGASEDEG-PWY]]
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*** [[orthology-synechocystis]]
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* [[PWY-5022]]
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*** [[annotation-experimental_annotation]]
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* [[PWY-5154]]
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* [[DIHYDROOROTATE-DEHYDROGENASE-RXN]]
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* [[PWY-6536]]
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** 2 associated gene(s):
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* [[PWY-6535]]
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*** [[Tiso_gene_4735]]
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* [[ARGSYNBSUB-PWY]]
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*** [[Tiso_gene_5280]]
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* [[PWY-4981]]
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** 2 reconstruction source(s) associated:
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* [[PWY-7400]]
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*** [[annotation-in-silico_annotation]]
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* [[PWY-6537]]
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*** [[orthology-esiliculosus]]
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* [[ARG-PRO-PWY]]
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* [[OROPRIBTRANS-RXN]]
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* [[ARGININE-SYN4-PWY]]
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** 3 associated gene(s):
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* [[CITRULBIO-PWY]]
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*** [[Tiso_gene_11163]]
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*** [[Tiso_gene_18647]]
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*** [[Tiso_gene_11164]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[OROTPDECARB-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_20050]]
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*** [[Tiso_gene_18647]]
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** 5 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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{{#set: left end position=358}}
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* ECOCYC:
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{{#set: transcription direction=POSITIVE}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5686 PWY-5686]
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{{#set: right end position=2753}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: centisome position=4.5082483    }}
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{{#set: taxonomic range=TAX-2}}
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{{#set: reaction associated=ACETYLORNTRANSAM-RXN|ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN|GABATRANSAM-RXN|ORNITHINE-GLU-AMINOTRANSFERASE-RXN|RXN-15007}}
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{{#set: common name=UMP biosynthesis I}}
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{{#set: pathway associated=PWY-4321|GLUTORN-PWY|PWY-6922|GLUDEG-I-PWY|PWY-6344|PWY-3341|P181-PWY|GLYSYN-ALA-PWY|ARGASEDEG-PWY|PWY-5022|PWY-5154|PWY-6536|PWY-6535|ARGSYNBSUB-PWY|PWY-4981|PWY-7400|PWY-6537|ARG-PRO-PWY|ARGININE-SYN4-PWY|CITRULBIO-PWY}}
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{{#set: common name=uridine-5'-phosphate biosynthesis I|de novo biosynthesis of uridine-5'-phosphate I|de novo biosynthesis of uridine-5'-monophosphate I}}
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{{#set: reaction found=6}}
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{{#set: total reaction=6}}
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{{#set: completion rate=100.0}}

Latest revision as of 20:39, 21 March 2018

Pathway PWY-5686

  • taxonomic range:
  • common name:
    • UMP biosynthesis I
  • Synonym(s):
    • uridine-5'-phosphate biosynthesis I
    • de novo biosynthesis of uridine-5'-phosphate I
    • de novo biosynthesis of uridine-5'-monophosphate I

Reaction(s) found

6 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5686&oldid=43034"