Difference between revisions of "2KETO-3METHYLVALERATE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_dipho...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2KETO-3METHYLVALERATE-RXN 2KETO-3METHYLVALERATE-RXN] == * direction: ** REVERSIBLE * common name: *...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2KETO-3METHYLVALERATE-RXN 2KETO-3METHYLVALERATE-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** ORF
+
** (S)-3-methyl-2-oxopentanoate dehydrogenase (acylating)
−
** nucleoside_diphosphate_kinase
+
−
** adenylate_kinase_domain-containing_protein_1
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
+
** [http://enzyme.expasy.org/EC/1.2.1 EC-1.2.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[2-METHYL-BUTYRYL-COA]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 dTDP[c] '''=>''' 1 ADP[c] '''+''' 1 dTTP[c]
+
** 1 NAD+[c] '''+''' 1 (S)-3-methyl-2-oxopentanoate[c] '''+''' 1 coenzyme A[c] '''<=>''' 1 2-methylbutanoyl-CoA[c] '''+''' 1 NADH[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17271]]
+
* Gene: [[Tiso_gene_3260]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_18084]]
−
* [[Tiso_gene_195]]
+
** Source: [[orthology-creinhardtii]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_11793]]
−
***EC-NUMBER
+
** Source: [[orthology-creinhardtii]]
−
* [[Tiso_gene_17272]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9290]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18224]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16529]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
+
* [[PWY-5108]], L-isoleucine biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5108 PWY-5108]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
+
* [[ILEUDEG-PWY]], L-isoleucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ILEUDEG-PWY ILEUDEG-PWY]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
+
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
−
** '''12''' reactions found over '''17''' reactions in the full pathway
+
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27682 27682]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30907 30907]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03171 R03171]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=ORF}}
+
{{#set: common name=(S)-3-methyl-2-oxopentanoate dehydrogenase (acylating)}}
−
{{#set: common name=nucleoside_diphosphate_kinase}}
+
{{#set: ec number=EC-1.2.1}}
−
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
+
{{#set: gene associated=Tiso_gene_3260|Tiso_gene_18084|Tiso_gene_11793}}
−
{{#set: ec number=EC-2.7.4.6}}
+
{{#set: in pathway=PWY-5108|ILEUDEG-PWY}}
−
{{#set: gene associated=Tiso_gene_17271|Tiso_gene_195|Tiso_gene_17272|Tiso_gene_9290|Tiso_gene_18224|Tiso_gene_16529}}
+
−
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 19:40, 21 March 2018

Reaction 2KETO-3METHYLVALERATE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • (S)-3-methyl-2-oxopentanoate dehydrogenase (acylating)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5108, L-isoleucine biosynthesis V: PWY-5108
    • 2 reactions found over 3 reactions in the full pathway
  • ILEUDEG-PWY, L-isoleucine degradation I: ILEUDEG-PWY
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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