Difference between revisions of "RXN-8443"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-31...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8443 RXN-8443] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8443 RXN-8443] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** L-glutamine biosynthesis III
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** [http://enzyme.expasy.org/EC/2.7.1.173 EC-2.7.1.173]
 
* Synonym(s):
 
* Synonym(s):
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** L-glutamine biosynthesis (nitrogen remobilization from senescing leaves)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''6''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[ACONITATEDEHYDR-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CPD-8259]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_13007]]
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** 1 ATP[c] '''+''' 1 β-D-ribosylnicotinate[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 β-nicotinate D-ribonucleotide[c]
−
** 3 reconstruction source(s) associated:
+
 
−
*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_18221]]
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* [[ACONITATEHYDR-RXN]]
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** Source: [[orthology-athaliana]]
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** 1 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_13007]]
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* Gene: [[Tiso_gene_2752]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-athaliana]]
−
*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_19763]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-athaliana]]
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* [[CITSYN-RXN]]
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* Gene: [[Tiso_gene_12827]]
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** 4 associated gene(s):
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_18030]]
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* Gene: [[Tiso_gene_19151]]
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*** [[Tiso_gene_9601]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_9603]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_9602]]
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* Gene: [[Tiso_gene_12828]]
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-athaliana]]
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_12252]]
−
*** [[manual-primary_network]]
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** Source: [[orthology-athaliana]]
−
*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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* [[GLUTAMATE-SYNTHASE-FERREDOXIN-RXN]]
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* Gene: [[Tiso_gene_17530]]
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** 3 associated gene(s):
+
** Source: [[orthology-athaliana]]
−
*** [[Tiso_gene_1773]]
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** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_2581]]
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* Gene: [[Tiso_gene_8616]]
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*** [[Tiso_gene_1154]]
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** Source: [[orthology-esiliculosus]]
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** 5 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_17047]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-athaliana]]
−
*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_9582]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-athaliana]]
−
*** [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
−
*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_8480]]
−
* [[GLUTAMINESYN-RXN]]
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** Source: [[orthology-athaliana]]
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** 4 associated gene(s):
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* Gene: [[Tiso_gene_4145]]
−
*** [[Tiso_gene_13820]]
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** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_6647]]
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* Gene: [[Tiso_gene_15010]]
−
*** [[Tiso_gene_13754]]
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** Source: [[orthology-athaliana]]
−
*** [[Tiso_gene_14842]]
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* Gene: [[Tiso_gene_19611]]
−
** 6 reconstruction source(s) associated:
+
** Source: [[orthology-athaliana]]
−
*** [[annotation-experimental_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[orthology-esiliculosus]]
+
* Gene: [[Tiso_gene_1696]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** [[orthology-athaliana]]
+
* Gene: [[Tiso_gene_12183]]
−
*** [[orthology-synechocystis]]
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** Source: [[orthology-athaliana]]
−
*** [[manual-primary_network]]
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* Gene: [[Tiso_gene_19579]]
−
* [[ISOCITDEH-RXN]]
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** Source: [[orthology-athaliana]]
−
** 2 associated gene(s):
+
* Gene: [[Tiso_gene_6111]]
−
*** [[Tiso_gene_18262]]
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** Source: [[orthology-athaliana]]
−
*** [[Tiso_gene_10809]]
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* Gene: [[Tiso_gene_1894]]
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** 4 reconstruction source(s) associated:
+
** Source: [[orthology-athaliana]]
−
*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
−
*** [[manual-primary_network]]
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* Gene: [[Tiso_gene_4144]]
−
*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4902]]
−
== Reaction(s) not found ==
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** Source: [[orthology-athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=ISOCITRATE-DEHYDROGENASE-NAD+-RXN ISOCITRATE-DEHYDROGENASE-NAD+-RXN]
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* Gene: [[Tiso_gene_13509]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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** Source: [[orthology-athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]
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* Gene: [[Tiso_gene_8561]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17305]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_12450]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17980]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_15483]]
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** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_18943]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_13724]]
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** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_12316]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_2262]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14059]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14030]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16455]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17795]]
 +
** Source: [[orthology-athaliana]]
 +
== Pathways  ==
 +
* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
 +
** '''3''' reactions found over '''11''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-3193}}
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* RHEA:
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{{#set: common name=L-glutamine biosynthesis III}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25568 25568]
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{{#set: common name=L-glutamine biosynthesis (nitrogen remobilization from senescing leaves)}}
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* LIGAND-RXN:
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{{#set: reaction found=6}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03347 R03347]
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{{#set: total reaction=9}}
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{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: completion rate=67.0}}
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{{#set: ec number=EC-2.7.1.173}}
 +
{{#set: gene associated=Tiso_gene_18221|Tiso_gene_2752|Tiso_gene_19763|Tiso_gene_12827|Tiso_gene_19151|Tiso_gene_12828|Tiso_gene_12252|Tiso_gene_17530|Tiso_gene_8616|Tiso_gene_17047|Tiso_gene_9582|Tiso_gene_8480|Tiso_gene_4145|Tiso_gene_15010|Tiso_gene_19611|Tiso_gene_1696|Tiso_gene_12183|Tiso_gene_19579|Tiso_gene_6111|Tiso_gene_1894|Tiso_gene_4144|Tiso_gene_4902|Tiso_gene_13509|Tiso_gene_8561|Tiso_gene_17305|Tiso_gene_12450|Tiso_gene_17980|Tiso_gene_15483|Tiso_gene_18943|Tiso_gene_13724|Tiso_gene_12316|Tiso_gene_2262|Tiso_gene_14059|Tiso_gene_14030|Tiso_gene_16455|Tiso_gene_17795}}
 +
{{#set: in pathway=PWY-5381}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:40, 21 March 2018

Reaction RXN-8443

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 β-D-ribosylnicotinate[c] => 1 H+[c] + 1 ADP[c] + 1 β-nicotinate D-ribonucleotide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5381, pyridine nucleotide cycling (plants): PWY-5381
    • 3 reactions found over 11 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8443&oldid=43102"