Difference between revisions of "RXN-8443"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYM-PHOSPH-RXN THYM-PHOSPH-RXN] == * direction: ** REVERSIBLE * common name: ** thymidine_phosphor...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8443 RXN-8443] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYM-PHOSPH-RXN THYM-PHOSPH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8443 RXN-8443] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** thymidine_phosphorylase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.2.2 EC-2.4.2.2]
+
** [http://enzyme.expasy.org/EC/2.7.1.173 EC-2.7.1.173]
−
** [http://enzyme.expasy.org/EC/2.4.2.4 EC-2.4.2.4]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[THYMIDINE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[DEOXY-D-RIBOSE-1-PHOSPHATE]][c] '''+''' 1 [[THYMINE]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[CPD-8259]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 thymidine[c] '''+''' 1 phosphate[c] '''<=>''' 1 2-deoxy-&alpha;-D-ribose 1-phosphate[c] '''+''' 1 thymine[c]
+
** 1 ATP[c] '''+''' 1 &beta;-D-ribosylnicotinate[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 &beta;-nicotinate D-ribonucleotide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1011]]
+
* Gene: [[Tiso_gene_18221]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2752]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_19763]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_12827]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_19151]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_12828]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_12252]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17530]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8616]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17047]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_9582]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8480]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_4145]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15010]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_19611]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1696]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_12183]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_19579]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_6111]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_1894]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4144]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4902]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_13509]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_8561]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17305]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_12450]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17980]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_15483]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_18943]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_13724]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_12316]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_2262]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14059]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14030]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16455]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17795]]
 +
** Source: [[orthology-athaliana]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7181]], pyrimidine deoxyribonucleosides degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7181 PWY-7181]
+
* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16037 16037]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25568 25568]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01570 R01570]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03347 R03347]
−
* UNIPROT:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P47717 P47717]
+
{{#set: ec number=EC-2.7.1.173}}
−
** [http://www.uniprot.org/uniprot/Q58081 Q58081]
+
{{#set: gene associated=Tiso_gene_18221|Tiso_gene_2752|Tiso_gene_19763|Tiso_gene_12827|Tiso_gene_19151|Tiso_gene_12828|Tiso_gene_12252|Tiso_gene_17530|Tiso_gene_8616|Tiso_gene_17047|Tiso_gene_9582|Tiso_gene_8480|Tiso_gene_4145|Tiso_gene_15010|Tiso_gene_19611|Tiso_gene_1696|Tiso_gene_12183|Tiso_gene_19579|Tiso_gene_6111|Tiso_gene_1894|Tiso_gene_4144|Tiso_gene_4902|Tiso_gene_13509|Tiso_gene_8561|Tiso_gene_17305|Tiso_gene_12450|Tiso_gene_17980|Tiso_gene_15483|Tiso_gene_18943|Tiso_gene_13724|Tiso_gene_12316|Tiso_gene_2262|Tiso_gene_14059|Tiso_gene_14030|Tiso_gene_16455|Tiso_gene_17795}}
−
** [http://www.uniprot.org/uniprot/P47297 P47297]
+
{{#set: in pathway=PWY-5381}}
−
** [http://www.uniprot.org/uniprot/P19971 P19971]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/P19663 P19663]
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/P07650 P07650]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P75052 P75052]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=thymidine_phosphorylase}}
+
−
{{#set: ec number=EC-2.4.2.2}}
+
−
{{#set: ec number=EC-2.4.2.4}}
+
−
{{#set: gene associated=Tiso_gene_1011}}
+
−
{{#set: in pathway=PWY-7181}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:40, 21 March 2018

Reaction RXN-8443

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 β-D-ribosylnicotinate[c] => 1 H+[c] + 1 ADP[c] + 1 β-nicotinate D-ribonucleotide[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5381, pyridine nucleotide cycling (plants): PWY-5381
    • 3 reactions found over 11 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8443&oldid=43102"