Difference between revisions of "P122-PWY"

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(Created page with "Category:Gene == Gene Tiso_gene_14060 == * left end position: ** 1681 * transcription direction: ** NEGATIVE * right end position: ** 4533 * centisome position: ** 28.6273...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Pathway]]
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== Gene Tiso_gene_14060 ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] ==
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* left end position:
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* taxonomic range:
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** 1681
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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* transcription direction:
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* common name:
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** NEGATIVE
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** heterolactic fermentation
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* right end position:
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−
** 4533
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−
* centisome position:
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−
** 28.627384   
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* Synonym(s):
 
* Synonym(s):
 +
** lactate heterofermentation
 +
** glucose fermentation to lactate
 +
** phosphoketolase pathway
  
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== Reactions associated ==
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== Reaction(s) found ==
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* [[MYRISTOYLACYLTRAN-RXN]]
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'''14''' reactions found over '''18''' reactions in the full pathway
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** in-silico_annotation
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* [[2PGADEHYDRAT-RXN]]
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***automated-name-match
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** 4 associated gene(s):
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== Pathways associated ==
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*** [[Tiso_gene_8720]]
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* [[KDO-NAGLIPASYN-PWY]]
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*** [[Tiso_gene_14718]]
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* [[KDO-LIPASYN-PWY]]
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*** [[Tiso_gene_5619]]
 +
*** [[Tiso_gene_13317]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[6PGLUCONDEHYDROG-RXN]]
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** 3 associated gene(s):
 +
*** [[Tiso_gene_91]]
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*** [[Tiso_gene_20238]]
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*** [[Tiso_gene_7157]]
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** 4 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[6PGLUCONOLACT-RXN]]
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** 5 associated gene(s):
 +
*** [[Tiso_gene_10799]]
 +
*** [[Tiso_gene_20412]]
 +
*** [[Tiso_gene_5901]]
 +
*** [[Tiso_gene_15950]]
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*** [[Tiso_gene_8585]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
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* [[ACETALD-DEHYDROG-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_7649]]
 +
*** [[Tiso_gene_2052]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-creinhardtii]]
 +
* [[ALCOHOL-DEHYDROG-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_18459]]
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*** [[Tiso_gene_7649]]
 +
*** [[Tiso_gene_6563]]
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*** [[Tiso_gene_5424]]
 +
*** [[Tiso_gene_5425]]
 +
*** [[Tiso_gene_6562]]
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
* [[FRUCTOKINASE-RXN]]
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** 3 associated gene(s):
 +
*** [[Tiso_gene_1303]]
 +
*** [[Tiso_gene_17974]]
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*** [[Tiso_gene_3107]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
 +
*** [[Tiso_gene_20000]]
 +
*** [[Tiso_gene_235]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_6766]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[GLU6PDEHYDROG-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_16918]]
 +
*** [[Tiso_gene_14877]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[GLUCOKIN-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_3107]]
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*** [[Tiso_gene_1303]]
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** 4 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_18264]]
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_14642]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[RIBULP3EPIM-RXN]]
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** 3 associated gene(s):
 +
*** [[Tiso_gene_19140]]
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*** [[Tiso_gene_4754]]
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*** [[Tiso_gene_10879]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
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* [[RXN-15513]]
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** 8 associated gene(s):
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*** [[Tiso_gene_7201]]
 +
*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_9923]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=L-LACTATE-DEHYDROGENASE-RXN L-LACTATE-DEHYDROGENASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOKETOLASE-RXN PHOSPHOKETOLASE-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1681}}
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{{#set: taxonomic range=TAX-1239}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=heterolactic fermentation}}
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{{#set: right end position=4533}}
+
{{#set: common name=lactate heterofermentation|glucose fermentation to lactate|phosphoketolase pathway}}
−
{{#set: centisome position=28.627384    }}
+
{{#set: reaction found=14}}
−
{{#set: reaction associated=MYRISTOYLACYLTRAN-RXN}}
+
{{#set: total reaction=18}}
−
{{#set: pathway associated=KDO-NAGLIPASYN-PWY|KDO-LIPASYN-PWY}}
+
{{#set: completion rate=78.0}}

Latest revision as of 19:40, 21 March 2018

Pathway P122-PWY

  • taxonomic range:
  • common name:
    • heterolactic fermentation
  • Synonym(s):
    • lactate heterofermentation
    • glucose fermentation to lactate
    • phosphoketolase pathway

Reaction(s) found

14 reactions found over 18 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=P122-PWY&oldid=43119"