Difference between revisions of "P122-PWY"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GlcNAc-GlcA-Gal-Gal-Xyl-Protein GlcNAc-GlcA-Gal-Gal-Xyl-Protein] == * common name: ** a [protei...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Pathway]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GlcNAc-GlcA-Gal-Gal-Xyl-Protein GlcNAc-GlcA-Gal-Gal-Xyl-Protein] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] ==
 +
* taxonomic range:
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
 
* common name:
 
* common name:
−
** a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine
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** heterolactic fermentation
 
* Synonym(s):
 
* Synonym(s):
−
** α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[proteoglycan]
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** lactate heterofermentation
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** α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosylproteoglycan
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** glucose fermentation to lactate
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** α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucuronosyl-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein]
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** phosphoketolase pathway
  
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== Reaction(s) known to consume the compound ==
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== Reaction(s) found ==
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* [[2.4.1.225-RXN]]
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'''14''' reactions found over '''18''' reactions in the full pathway
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== Reaction(s) known to produce the compound ==
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* [[2PGADEHYDRAT-RXN]]
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* [[2.4.1.223-RXN]]
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** 4 associated gene(s):
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== Reaction(s) of unknown directionality ==
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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*** [[Tiso_gene_5619]]
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*** [[Tiso_gene_13317]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[6PGLUCONDEHYDROG-RXN]]
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** 3 associated gene(s):
 +
*** [[Tiso_gene_91]]
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*** [[Tiso_gene_20238]]
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*** [[Tiso_gene_7157]]
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** 4 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[6PGLUCONOLACT-RXN]]
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** 5 associated gene(s):
 +
*** [[Tiso_gene_10799]]
 +
*** [[Tiso_gene_20412]]
 +
*** [[Tiso_gene_5901]]
 +
*** [[Tiso_gene_15950]]
 +
*** [[Tiso_gene_8585]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
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* [[ACETALD-DEHYDROG-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_7649]]
 +
*** [[Tiso_gene_2052]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-creinhardtii]]
 +
* [[ALCOHOL-DEHYDROG-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_18459]]
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*** [[Tiso_gene_7649]]
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*** [[Tiso_gene_6563]]
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*** [[Tiso_gene_5424]]
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*** [[Tiso_gene_5425]]
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*** [[Tiso_gene_6562]]
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** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
* [[FRUCTOKINASE-RXN]]
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** 3 associated gene(s):
 +
*** [[Tiso_gene_1303]]
 +
*** [[Tiso_gene_17974]]
 +
*** [[Tiso_gene_3107]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[GAPOXNPHOSPHN-RXN]]
 +
** 5 associated gene(s):
 +
*** [[Tiso_gene_20000]]
 +
*** [[Tiso_gene_235]]
 +
*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_6766]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[GLU6PDEHYDROG-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_16918]]
 +
*** [[Tiso_gene_14877]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
 +
* [[GLUCOKIN-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_3107]]
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*** [[Tiso_gene_1303]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_18206]]
 +
*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
 +
*** [[Tiso_gene_14505]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[PGLUCISOM-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_19480]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_3526]]
 +
*** [[Tiso_gene_18264]]
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_14642]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[RIBULP3EPIM-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_19140]]
 +
*** [[Tiso_gene_4754]]
 +
*** [[Tiso_gene_10879]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[RXN-15513]]
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** 8 associated gene(s):
 +
*** [[Tiso_gene_7201]]
 +
*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16271]]
 +
*** [[Tiso_gene_9922]]
 +
*** [[Tiso_gene_2841]]
 +
*** [[Tiso_gene_2365]]
 +
*** [[Tiso_gene_14664]]
 +
*** [[Tiso_gene_9923]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=L-LACTATE-DEHYDROGENASE-RXN L-LACTATE-DEHYDROGENASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOKETOLASE-RXN PHOSPHOKETOLASE-RXN]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine}}
+
{{#set: taxonomic range=TAX-1239}}
−
{{#set: common name=α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[proteoglycan]|α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosylproteoglycan|α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucuronosyl-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein]}}
+
{{#set: common name=heterolactic fermentation}}
−
{{#set: consumed by=2.4.1.225-RXN}}
+
{{#set: common name=lactate heterofermentation|glucose fermentation to lactate|phosphoketolase pathway}}
−
{{#set: produced by=2.4.1.223-RXN}}
+
{{#set: reaction found=14}}
 +
{{#set: total reaction=18}}
 +
{{#set: completion rate=78.0}}

Latest revision as of 19:40, 21 March 2018

Pathway P122-PWY

  • taxonomic range:
  • common name:
    • heterolactic fermentation
  • Synonym(s):
    • lactate heterofermentation
    • glucose fermentation to lactate
    • phosphoketolase pathway

Reaction(s) found

14 reactions found over 18 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=P122-PWY&oldid=43119"