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| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] == | + | == Gene Tiso_gene_14060 == |
| − | * direction: | + | * right end position: |
| − | ** LEFT-TO-RIGHT | + | ** 4533 |
| − | * common name: | + | * transcription direction: |
| − | ** ORF | + | ** NEGATIVE |
| − | ** nucleoside_diphosphate_kinase | + | * left end position: |
| − | ** adenylate_kinase_domain-containing_protein_1 | + | ** 1681 |
| − | * ec number: | + | * centisome position: |
| − | ** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6] | + | ** 28.627384 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers: | + | * Reaction: [[MYRISTOYLACYLTRAN-RXN]] |
| − | ** 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[TTP]][c] '''+''' 1 [[ADP]][c]
| + | ** Source: [[annotation-in-silico_annotation]] |
| − | * With common name(s):
| + | *** Assignment: automated-name-match |
| − | ** 1 ATP[c] '''+''' 1 dTDP[c] '''=>''' 1 dTTP[c] '''+''' 1 ADP[c]
| + | == Pathways associated == |
| − | | + | * [[KDO-NAGLIPASYN-PWY]] |
| − | == Genes associated with this reaction ==
| + | * [[KDO-LIPASYN-PWY]] |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_9290]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_17271]]
| + | |
| − | ** IN-SILICO_ANNOTATION | + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_18224]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_17272]]
| + | |
| − | ** IN-SILICO_ANNOTATION | + | |
| − | ***EC-NUMBER | + | |
| − | * [[Tiso_gene_16529]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[synechocystis]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_195]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | == Pathways == | + | |
| − | * [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210] | + | |
| − | ** '''8''' reactions found over '''8''' reactions in the full pathway
| + | |
| − | * [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
| + | |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] | + | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
| + | |
| − | ** '''4''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
| + | |
| − | ** '''4''' reactions found over '''4''' reactions in the full pathway
| + | |
| − | * [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
| + | |
| − | ** '''12''' reactions found over '''17''' reactions in the full pathway
| + | |
| − | * [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
| + | |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * [[orthology]]:
| + | |
| − | ** [[pantograph]]:
| + | |
| − | *** [[synechocystis]]
| + | |
| − | *** [[athaliana]]
| + | |
| − | *** [[esiliculosus]]
| + | |
| − | * [[manual]]:
| + | |
| − | ** [[primary_network]]
| + | |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[experimental_annotation]]
| + | |
| − | *** [[in-silico_annotation]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: right end position=4533}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27682 27682]
| + | {{#set: transcription direction=NEGATIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: left end position=1681}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
| + | {{#set: centisome position=28.627384 }} |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | {{#set: reaction associated=MYRISTOYLACYLTRAN-RXN}} |
| − | {{#set: common name=ORF}} | + | {{#set: pathway associated=KDO-NAGLIPASYN-PWY|KDO-LIPASYN-PWY}} |
| − | {{#set: common name=nucleoside_diphosphate_kinase}} | + | |
| − | {{#set: common name=adenylate_kinase_domain-containing_protein_1}} | + | |
| − | {{#set: ec number=EC-2.7.4.6}}
| + | |
| − | {{#set: gene associated=Tiso_gene_9290|Tiso_gene_17271|Tiso_gene_18224|Tiso_gene_17272|Tiso_gene_16529|Tiso_gene_195}} | + | |
| − | {{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}} | + | |
| − | {{#set: reconstruction category=orthology}}
| + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
| + | |
| − | {{#set: reconstruction category=manual}}
| + | |
| − | {{#set: reconstruction source=primary_network}}
| + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |
