Difference between revisions of "PWY-5514"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_dipho...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-68459 TAX-6...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-68459 TAX-68459]
 
* common name:
 
* common name:
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** ORF
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** UDP-N-acetyl-D-galactosamine biosynthesis II
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** nucleoside_diphosphate_kinase
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** adenylate_kinase_domain-containing_protein_1
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''7''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
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* [[GLUCOKIN-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 ATP[c] '''+''' 1 dTDP[c] '''=>''' 1 ADP[c] '''+''' 1 dTTP[c]
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*** [[Tiso_gene_3107]]
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*** [[Tiso_gene_1303]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_18224]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_16529]]
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* [[GLUCOSAMINEPNACETYLTRANS-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 0 associated gene:
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*** Assignment: EC-NUMBER
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* [[NAG1P-URIDYLTRANS-RXN]]
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** Source: [[orthology-athaliana]]
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** 4 associated gene(s):
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_6457]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_19372]]
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* Gene: [[Tiso_gene_195]]
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*** [[Tiso_gene_6459]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6458]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_17271]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* [[PGLUCISOM-RXN]]
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* Gene: [[Tiso_gene_17272]]
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** 1 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_19480]]
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*** Assignment: EC-NUMBER
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** 3 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_9290]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PHOSACETYLGLUCOSAMINEMUT-RXN]]
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
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** 2 associated gene(s):
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** '''8''' reactions found over '''8''' reactions in the full pathway
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*** [[Tiso_gene_13231]]
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
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*** [[Tiso_gene_13230]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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** 4 reconstruction source(s) associated:
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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*** [[annotation-in-silico_annotation]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
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*** [[annotation-experimental_annotation]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
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== Reaction(s) not found ==
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSAMINE-6-P-DEAMIN-RXN GLUCOSAMINE-6-P-DEAMIN-RXN]
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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* [http://metacyc.org/META/NEW-IMAGE?object=UDP-N-ACETYLGLUCOSAMINE-4-EPIMERASE-RXN UDP-N-ACETYLGLUCOSAMINE-4-EPIMERASE-RXN]
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** '''12''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-68459}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27682 27682]
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{{#set: common name=UDP-N-acetyl-D-galactosamine biosynthesis II}}
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* LIGAND-RXN:
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{{#set: reaction found=5}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
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{{#set: total reaction=7}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=71.0}}
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{{#set: common name=ORF}}
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{{#set: common name=nucleoside_diphosphate_kinase}}
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{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
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{{#set: ec number=EC-2.7.4.6}}
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{{#set: gene associated=Tiso_gene_18224|Tiso_gene_16529|Tiso_gene_195|Tiso_gene_17271|Tiso_gene_17272|Tiso_gene_9290}}
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{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:40, 21 March 2018

Pathway PWY-5514

  • taxonomic range:
  • common name:
    • UDP-N-acetyl-D-galactosamine biosynthesis II
  • Synonym(s):

Reaction(s) found

5 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5514&oldid=43137"