Difference between revisions of "PWY-5484"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11519 RXN-11519] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11519 RXN-11519] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 +
* common name:
 +
** glycolysis II (from fructose 6-phosphate)
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''11''' reactions found over '''11''' reactions in the full pathway
−
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[3-7-DIMETHYLXANTHINE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-12482]][c]
+
* [[2PGADEHYDRAT-RXN]]
−
* With common name(s):
+
** 4 associated gene(s):
−
** 1 oxygen[c] '''+''' 1 H2O[c] '''+''' 1 theobromine[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 3,7-dimethylurate[c]
+
*** [[Tiso_gene_8720]]
−
 
+
*** [[Tiso_gene_14718]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_5619]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_13317]]
−
* Gene: [[Tiso_gene_11775]]
+
** 7 reconstruction source(s) associated:
−
** Source: [[orthology-athaliana]]
+
*** [[annotation-experimental_annotation]]
−
== Pathways  ==
+
*** [[orthology-esiliculosus]]
−
* [[PWY-6632]], caffeine degradation IV (bacteria, via demethylation and oxidation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6632 PWY-6632]
+
*** [[annotation-in-silico_annotation]]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
*** [[orthology-athaliana]]
−
== Reconstruction information  ==
+
*** [[orthology-synechocystis]]
−
* Category: [[orthology]]
+
*** [[manual-primary_network]]
−
** Source: [[orthology-athaliana]]
+
*** [[orthology-creinhardtii]]
−
*** Tool: [[pantograph]]
+
* [[3PGAREARR-RXN]]
 +
** 16 associated gene(s):
 +
*** [[Tiso_gene_15048]]
 +
*** [[Tiso_gene_7201]]
 +
*** [[Tiso_gene_9922]]
 +
*** [[Tiso_gene_2841]]
 +
*** [[Tiso_gene_14530]]
 +
*** [[Tiso_gene_16754]]
 +
*** [[Tiso_gene_2365]]
 +
*** [[Tiso_gene_16271]]
 +
*** [[Tiso_gene_5468]]
 +
*** [[Tiso_gene_20311]]
 +
*** [[Tiso_gene_14664]]
 +
*** [[Tiso_gene_15391]]
 +
*** [[Tiso_gene_14212]]
 +
*** [[Tiso_gene_10516]]
 +
*** [[Tiso_gene_9923]]
 +
*** [[Tiso_gene_2667]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[6PFRUCTPHOS-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_5733]]
 +
*** [[Tiso_gene_596]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[F16ALDOLASE-RXN]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_12272]]
 +
*** [[Tiso_gene_65]]
 +
*** [[Tiso_gene_9119]]
 +
*** [[Tiso_gene_14568]]
 +
*** [[Tiso_gene_9179]]
 +
*** [[Tiso_gene_9118]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[F16BDEPHOS-RXN]]
 +
** 7 associated gene(s):
 +
*** [[Tiso_gene_15398]]
 +
*** [[Tiso_gene_9435]]
 +
*** [[Tiso_gene_16502]]
 +
*** [[Tiso_gene_4905]]
 +
*** [[Tiso_gene_8226]]
 +
*** [[Tiso_gene_4904]]
 +
*** [[Tiso_gene_3483]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[GAPOXNPHOSPHN-RXN]]
 +
** 5 associated gene(s):
 +
*** [[Tiso_gene_20000]]
 +
*** [[Tiso_gene_235]]
 +
*** [[Tiso_gene_10646]]
 +
*** [[Tiso_gene_3344]]
 +
*** [[Tiso_gene_6766]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[PEPDEPHOS-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_18206]]
 +
*** [[Tiso_gene_14504]]
 +
*** [[Tiso_gene_974]]
 +
*** [[Tiso_gene_14505]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[PEPSYNTH-RXN]]
 +
** 0 associated gene:
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[PHOSGLYPHOS-RXN]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_3526]]
 +
*** [[Tiso_gene_18264]]
 +
*** [[Tiso_gene_3527]]
 +
*** [[Tiso_gene_18263]]
 +
*** [[Tiso_gene_12104]]
 +
*** [[Tiso_gene_14642]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[RXN-15513]]
 +
** 8 associated gene(s):
 +
*** [[Tiso_gene_7201]]
 +
*** [[Tiso_gene_14530]]
 +
*** [[Tiso_gene_16271]]
 +
*** [[Tiso_gene_9922]]
 +
*** [[Tiso_gene_2841]]
 +
*** [[Tiso_gene_2365]]
 +
*** [[Tiso_gene_14664]]
 +
*** [[Tiso_gene_9923]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[TRIOSEPISOMERIZATION-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_19961]]
 +
*** [[Tiso_gene_20000]]
 +
*** [[Tiso_gene_19962]]
 +
*** [[Tiso_gene_10646]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* ECOCYC:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07978 R07978]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5484 PWY-5484]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: taxonomic range=TAX-2759}}
−
{{#set: gene associated=Tiso_gene_11775}}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: in pathway=PWY-6632}}
+
{{#set: taxonomic range=TAX-2157}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=glycolysis II (from fructose 6-phosphate)}}
−
{{#set: reconstruction source=orthology-athaliana}}
+
{{#set: reaction found=11}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: total reaction=11}}
 +
{{#set: completion rate=100.0}}

Latest revision as of 19:40, 21 March 2018

Pathway PWY-5484

  • taxonomic range:
  • common name:
    • glycolysis II (from fructose 6-phosphate)
  • Synonym(s):

Reaction(s) found

11 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5484&oldid=43140"