Difference between revisions of "PWY-2221"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPDEHYRHAMREDUCT-RXN DTDPDEHYRHAMREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** m...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183963 TAX-...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPDEHYRHAMREDUCT-RXN DTDPDEHYRHAMREDUCT-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183963 TAX-183963]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-183924 TAX-183924]
 
* common name:
 
* common name:
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** methionine_adenosyltransferase_regulatory_beta_subunit-related
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** Entner-Doudoroff pathway III (semi-phosphorylative)
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.133 EC-1.1.1.133]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''9''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[DTDP-DEOH-DEOXY-MANNOSE]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[DTDP-RHAMNOSE]][c] '''+''' 1 [[NADP]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 H+[c] '''+''' 1 dTDP-4-dehydro-β-L-rhamnose[c] '''+''' 1 NADPH[c] '''=>''' 1 dTDP-β-L-rhamnose[c] '''+''' 1 NADP+[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_4472]]
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** 7 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY]
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*** [[orthology-athaliana]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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== Reconstruction information  ==
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*** [[manual-primary_network]]
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* [[annotation]]:
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*** [[orthology-creinhardtii]]
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** [[pathwaytools]]:
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* [[3PGAREARR-RXN]]
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*** [[in-silico_annotation]]
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** 16 associated gene(s):
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*** [[Tiso_gene_15048]]
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*** [[Tiso_gene_7201]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GLUCONOLACT-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_1947]]
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*** [[Tiso_gene_15098]]
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*** [[Tiso_gene_1948]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[KDPGALDOL-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_12620]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=DEOXYGLUCONOKIN-RXN DEOXYGLUCONOKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUCONATE-DEHYDRATASE-RXN GLUCONATE-DEHYDRATASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE-1-DEHYDROGENASE-NADP+-RXN GLUCOSE-1-DEHYDROGENASE-NADP+-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3443 RXN-3443]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-183963}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21796 21796]
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{{#set: taxonomic range=TAX-183924}}
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* LIGAND-RXN:
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{{#set: common name=Entner-Doudoroff pathway III (semi-phosphorylative)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02777 R02777]
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{{#set: reaction found=5}}
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* UNIPROT:
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/Q9JV74 Q9JV74]
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{{#set: completion rate=56.0}}
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** [http://www.uniprot.org/uniprot/P37760 P37760]
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** [http://www.uniprot.org/uniprot/Q46769 Q46769]
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** [http://www.uniprot.org/uniprot/O33664 O33664]
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** [http://www.uniprot.org/uniprot/O66251 O66251]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=methionine_adenosyltransferase_regulatory_beta_subunit-related}}
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{{#set: ec number=EC-1.1.1.133}}
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{{#set: gene associated=Tiso_gene_4472}}
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{{#set: in pathway=DTDPRHAMSYN-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:40, 21 March 2018

Pathway PWY-2221

  • taxonomic range:
  • common name:
    • Entner-Doudoroff pathway III (semi-phosphorylative)
  • Synonym(s):

Reaction(s) found

5 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-2221&oldid=43156"