Difference between revisions of "PWY-5331"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACP-S-ACETYLTRANSFER-RXN ACP-S-ACETYLTRANSFER-RXN] == * direction: ** REVERSIBLE * common name: **...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5331 PWY-5331] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACP-S-ACETYLTRANSFER-RXN ACP-S-ACETYLTRANSFER-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5331 PWY-5331] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
 
* common name:
 
* common name:
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** polyketide_synthase
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** taurine biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.38 EC-2.3.1.38]
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* Synonym(s):
 
* Synonym(s):
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** L-cysteine degradation IV
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''4''' reactions in the full pathway
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** 1 [[ACP]][c] '''+''' 1 [[ACETYL-COA]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[ACETYL-ACP]][c]
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* [[CYSTEAMINE-DIOXYGENASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 a holo-[acyl-carrier protein][c] '''+''' 1 acetyl-CoA[c] '''<=>''' 1 coenzyme A[c] '''+''' 1 an acetyl-[acp][c]
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*** [[Tiso_gene_9748]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_15991]]
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* [[CYSTEINE-DIOXYGENASE-RXN]]
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** Source: [[orthology-athaliana]]
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** 1 associated gene(s):
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_1457]]
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** Source: [[orthology-synechocystis]]
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** 3 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_135]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_136]]
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== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=HYPOTAURINE-DEHYDROGENASE-RXN HYPOTAURINE-DEHYDROGENASE-RXN]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=SULFINOALANINE-DECARBOXYLASE-RXN SULFINOALANINE-DECARBOXYLASE-RXN]
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* Gene: [[Tiso_gene_13394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10876]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01624 R01624]
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{{#set: taxonomic range=TAX-40674}}
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* UNIPROT:
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{{#set: common name=taurine biosynthesis}}
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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{{#set: common name=L-cysteine degradation IV}}
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** [http://www.uniprot.org/uniprot/P08757 P08757]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/P07149 P07149]
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/P12785 P12785]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-2.3.1.38}}
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{{#set: gene associated=Tiso_gene_15991|Tiso_gene_135|Tiso_gene_136|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_10876}}
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{{#set: in pathway=PWY-5966|FASYN-INITIAL-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:41, 21 March 2018

Pathway PWY-5331

  • taxonomic range:
  • common name:
    • taurine biosynthesis
  • Synonym(s):
    • L-cysteine degradation IV

Reaction(s) found

2 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5331&oldid=43195"