Difference between revisions of "Tiso gene 18420"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15013 RXN-15013] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ide...")
(Created page with "Category:Gene == Gene Tiso_gene_18420 == * right end position: ** 2644 * transcription direction: ** POSITIVE * left end position: ** 3 * centisome position: ** 9.8944600e...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15013 RXN-15013] ==
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== Gene Tiso_gene_18420 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 2644
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* transcription direction:
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** POSITIVE
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* left end position:
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** 3
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* centisome position:
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** 9.8944600e-2
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[AICARTRANSFORM-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[CPD-15900]][c] '''<=>''' 1 [[3-HYDROXYPIMELYL-COA]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H2O[c] '''+''' 1 2-hydroxy-6-oxocyclohexane-1-carbonyl-CoA[c] '''<=>''' 1 3-hydroxypimeloyl-CoA[c] '''+''' 1 H+[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[FPAIF]]
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* [[Tiso_gene_7477]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[athaliana]]
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* Reaction: [[IMPCYCLOHYDROLASE-RXN]]
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== Pathways  ==
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* [[CENTBENZCOA-PWY]], benzoyl-CoA degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=CENTBENZCOA-PWY CENTBENZCOA-PWY]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
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** '''5''' reactions found over '''17''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[R04560]]
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** Source: [[orthology-synechocystis]]
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== Pathways associated ==
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* [[PWY-6123]]
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* [[PWY-6124]]
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* [[PWY-7234]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=REVERSIBLE}}
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{{#set: right end position=2644}}
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{{#set: gene associated=Tiso_gene_7477}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: in pathway=CENTBENZCOA-PWY|PWY-7401}}
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{{#set: left end position=3}}
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{{#set: reconstruction category=orthology}}
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{{#set: centisome position=9.8944600e-2}}
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{{#set: reconstruction source=orthology-athaliana}}
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{{#set: reaction associated=AICARTRANSFORM-RXN|FPAIF|IMPCYCLOHYDROLASE-RXN|R04560}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: pathway associated=PWY-6123|PWY-6124|PWY-7234}}

Latest revision as of 19:41, 21 March 2018

Gene Tiso_gene_18420

  • right end position:
    • 2644
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3
  • centisome position:
    • 9.8944600e-2
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18420&oldid=43268"