Difference between revisions of "RXN0-2161"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2261 PWY-2261] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** structural_maintenan...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2261 PWY-2261] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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* common name:
 
* common name:
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** ascorbate glutathione cycle
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** ORF
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** structural_maintenance_of_chromosomes_protein_6
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* Synonym(s):
 
* Synonym(s):
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** hydrogen peroxide detoxification
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''4''' reactions in the full pathway
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* With identifiers:
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* [[RXN-3521]]
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** 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[AMP]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_5435]]
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** 1 ATP[c] '''+''' 1 L-serine[c] '''+''' 1 a tRNAsec[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 AMP[c]
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*** [[Tiso_gene_15962]]
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*** [[Tiso_gene_16028]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_587]]
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* [[RXN-3523]]
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** Source: [[annotation-experimental_annotation]]
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** 0 associated gene:
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*** Assignment: EC-NUMBER
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_10015]]
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== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.8.5.1-RXN 1.8.5.1-RXN]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3522 RXN-3522]
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* Gene: [[Tiso_gene_1682]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_1684]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ARACYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-2261 PWY-2261]
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** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
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{{#set: taxonomic range=TAX-33682}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: common name=ORF}}
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{{#set: taxonomic range=TAX-1117}}
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{{#set: common name=structural_maintenance_of_chromosomes_protein_6}}
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{{#set: common name=ascorbate glutathione cycle}}
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{{#set: ec number=EC-6.1.1.11}}
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{{#set: common name=hydrogen peroxide detoxification}}
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{{#set: gene associated=Tiso_gene_587|Tiso_gene_10015|Tiso_gene_1682|Tiso_gene_1684}}
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{{#set: reaction found=2}}
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{{#set: in pathway=PWY0-901|PWY-6281}}
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{{#set: total reaction=4}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: completion rate=50.0}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:42, 21 March 2018

Reaction RXN0-2161

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • structural_maintenance_of_chromosomes_protein_6
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 L-serine[c] + 1 a tRNAsec[c] => 1 diphosphate[c] + 1 an L-seryl-[tRNAsec][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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