Difference between revisions of "RXN-11839"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLUCISOM-RXN PGLUCISOM-RXN] == * direction: ** REVERSIBLE * common name: ** glucose-6-phosphate_is...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11839 RXN-11839] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_pseudouridinesynthase...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLUCISOM-RXN PGLUCISOM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11839 RXN-11839] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glucose-6-phosphate_isomerase
+
** trna_pseudouridinesynthase
 +
** trna_pseudouridine_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.3.1.9 EC-5.3.1.9]
+
** [http://enzyme.expasy.org/EC/5.4.99.25 EC-5.4.99.25]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[D-glucopyranose-6-phosphate]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c]
+
** 1 [[tRNA-uridine55]][c] '''=>''' 1 [[tRNA-pseudouridine55]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-glucopyranose 6-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c]
+
** 1 a uridine55 in tRNA[c] '''=>''' 1 a pseudouridine55 in tRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_19480]]
+
* Gene: [[Tiso_gene_2988]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_4021]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_9833]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_11913]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_19622]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_18959]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_4020]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[RUMP-PWY]], formaldehyde oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 
−
** '''12''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-3801]], sucrose degradation II (sucrose synthase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3801 PWY-3801]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 
−
** '''11''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 
−
** '''8''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-5659]], GDP-mannose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5659 PWY-5659]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6981]], chitin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6981 PWY-6981]
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5384]], sucrose degradation IV (sucrose phosphorylase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5384 PWY-5384]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7347]], sucrose biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7347 PWY-7347]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[UDPNAGSYN-PWY]], UDP-N-acetyl-D-glucosamine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=UDPNAGSYN-PWY UDPNAGSYN-PWY]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-621]], sucrose degradation III (sucrose invertase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-621 PWY-621]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-622]], starch biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-622 PWY-622]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5054]], sorbitol biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5054 PWY-5054]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6992]], 1,5-anhydrofructose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6992 PWY-6992]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
−
** '''14''' reactions found over '''18''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11816 11816]
+
{{#set: common name=trna_pseudouridinesynthase}}
−
* LIGAND-RXN:
+
{{#set: common name=trna_pseudouridine_synthase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00771 R00771]
+
{{#set: ec number=EC-5.4.99.25}}
−
* UNIPROT:
+
{{#set: gene associated=Tiso_gene_2988|Tiso_gene_4021|Tiso_gene_9833|Tiso_gene_11913|Tiso_gene_19622|Tiso_gene_18959|Tiso_gene_4020}}
−
** [http://www.uniprot.org/uniprot/P06744 P06744]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/P28718 P28718]
+
−
** [http://www.uniprot.org/uniprot/Q7LZP0 Q7LZP0]
+
−
** [http://www.uniprot.org/uniprot/O83488 O83488]
+
−
** [http://www.uniprot.org/uniprot/Q9JTW1 Q9JTW1]
+
−
** [http://www.uniprot.org/uniprot/Q59000 Q59000]
+
−
** [http://www.uniprot.org/uniprot/Q9PMD4 Q9PMD4]
+
−
** [http://www.uniprot.org/uniprot/O25781 O25781]
+
−
** [http://www.uniprot.org/uniprot/O84382 O84382]
+
−
** [http://www.uniprot.org/uniprot/Q9JSS6 Q9JSS6]
+
−
** [http://www.uniprot.org/uniprot/P81181 P81181]
+
−
** [http://www.uniprot.org/uniprot/P08059 P08059]
+
−
** [http://www.uniprot.org/uniprot/P50309 P50309]
+
−
** [http://www.uniprot.org/uniprot/P13376 P13376]
+
−
** [http://www.uniprot.org/uniprot/P13375 P13375]
+
−
** [http://www.uniprot.org/uniprot/P12709 P12709]
+
−
** [http://www.uniprot.org/uniprot/P0A6T1 P0A6T1]
+
−
** [http://www.uniprot.org/uniprot/P06745 P06745]
+
−
** [http://www.uniprot.org/uniprot/P13377 P13377]
+
−
** [http://www.uniprot.org/uniprot/P12341 P12341]
+
−
** [http://www.uniprot.org/uniprot/P18240 P18240]
+
−
** [http://www.uniprot.org/uniprot/P29333 P29333]
+
−
** [http://www.uniprot.org/uniprot/P34796 P34796]
+
−
** [http://www.uniprot.org/uniprot/P34797 P34797]
+
−
** [http://www.uniprot.org/uniprot/P54240 P54240]
+
−
** [http://www.uniprot.org/uniprot/P54242 P54242]
+
−
** [http://www.uniprot.org/uniprot/Q59088 Q59088]
+
−
** [http://www.uniprot.org/uniprot/P78033 P78033]
+
−
** [http://www.uniprot.org/uniprot/P52983 P52983]
+
−
** [http://www.uniprot.org/uniprot/P49105 P49105]
+
−
** [http://www.uniprot.org/uniprot/P42862 P42862]
+
−
** [http://www.uniprot.org/uniprot/P42863 P42863]
+
−
** [http://www.uniprot.org/uniprot/Q9SB57 Q9SB57]
+
−
** [http://www.uniprot.org/uniprot/O82058 O82058]
+
−
** [http://www.uniprot.org/uniprot/O82059 O82059]
+
−
** [http://www.uniprot.org/uniprot/O61113 O61113]
+
−
** [http://www.uniprot.org/uniprot/P78917 P78917]
+
−
** [http://www.uniprot.org/uniprot/Q9RMC1 Q9RMC1]
+
−
** [http://www.uniprot.org/uniprot/Q9X670 Q9X670]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=glucose-6-phosphate_isomerase}}
+
−
{{#set: ec number=EC-5.3.1.9}}
+
−
{{#set: gene associated=Tiso_gene_19480}}
+
−
{{#set: in pathway=RUMP-PWY|GLYCOLYSIS|PWY-3801|PWY-7385|P124-PWY|PWY-6142|PWY-5659|PWY-6981|P341-PWY|PWY-5384|PWY-7347|PWY66-399|SUCSYN-PWY|UDPNAGSYN-PWY|PWY-621|PWY-622|PWY-5054|PWY-6992|ANAGLYCOLYSIS-PWY|GLUCONEO-PWY|PWY-7238|PWY-5514|P122-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 19:45, 21 March 2018

Reaction RXN-11839

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • trna_pseudouridinesynthase
    • trna_pseudouridine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11839&oldid=43598"