Difference between revisions of "RXN-11839"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMHYDR-RXN FUMHYDR-RXN] == * direction: ** REVERSIBLE * common name: ** pol-related * ec number: *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11839 RXN-11839] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_pseudouridinesynthase...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMHYDR-RXN FUMHYDR-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11839 RXN-11839] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** pol-related
+
** trna_pseudouridinesynthase
 +
** trna_pseudouridine_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.2.1.2 EC-4.2.1.2]
+
** [http://enzyme.expasy.org/EC/5.4.99.25 EC-5.4.99.25]
 
* Synonym(s):
 
* Synonym(s):
−
** fumarate hydration
 
−
** malate dehydration
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[MAL]][c] '''<=>''' 1 [[FUM]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[tRNA-uridine55]][c] '''=>''' 1 [[tRNA-pseudouridine55]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (S)-malate[c] '''<=>''' 1 fumarate[c] '''+''' 1 H2O[c]
+
** 1 a uridine55 in tRNA[c] '''=>''' 1 a pseudouridine55 in tRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6720]]
+
* Gene: [[Tiso_gene_2988]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_3691]]
+
* Gene: [[Tiso_gene_4021]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_9833]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_11913]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_19622]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_18959]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_4020]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
−
** '''9''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
 
−
** '''7''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 
−
** '''5''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
−
** '''7''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''11''' reactions found over '''18''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P108-PWY]], pyruvate fermentation to propanoate I: [http://metacyc.org/META/NEW-IMAGE?object=P108-PWY P108-PWY]
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 
−
** '''7''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12460 12460]
+
{{#set: common name=trna_pseudouridinesynthase}}
−
* PIR:
+
{{#set: common name=trna_pseudouridine_synthase}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47692 A47692]
+
{{#set: ec number=EC-5.4.99.25}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49760 A49760]
+
{{#set: gene associated=Tiso_gene_2988|Tiso_gene_4021|Tiso_gene_9833|Tiso_gene_11913|Tiso_gene_19622|Tiso_gene_18959|Tiso_gene_4020}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64377 A64377]
+
{{#set: in pathway=}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81281 A81281]
+
{{#set: reconstruction category=annotation}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81807 A81807]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B44511 B44511]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81862 B81862]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64461 E64461]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64685 E64685]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70896 H70896]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H71462 H71462]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4293 JC4293]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4982 JC4982]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0062 PA0062]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40448 S40448]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76348 S76348]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T00433 T00433]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07374 T07374]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41265 T41265]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T43727 T43727]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45269 T45269]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBSC8 UFBSC8]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBYM UFBYM]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFEC UFEC]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFECAQ UFECAQ]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFHUM UFHUM]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFPG UFPG]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFRT UFRT]
+
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R01082 R01082]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q04718 Q04718]
+
−
** [http://www.uniprot.org/uniprot/Q58034 Q58034]
+
−
** [http://www.uniprot.org/uniprot/O69294 O69294]
+
−
** [http://www.uniprot.org/uniprot/Q9JTE3 Q9JTE3]
+
−
** [http://www.uniprot.org/uniprot/P14407 P14407]
+
−
** [http://www.uniprot.org/uniprot/Q9JTR0 Q9JTR0]
+
−
** [http://www.uniprot.org/uniprot/Q58690 Q58690]
+
−
** [http://www.uniprot.org/uniprot/O25883 O25883]
+
−
** [http://www.uniprot.org/uniprot/O53446 O53446]
+
−
** [http://www.uniprot.org/uniprot/O84863 O84863]
+
−
** [http://www.uniprot.org/uniprot/Q51404 Q51404]
+
−
** [http://www.uniprot.org/uniprot/Q7M4Z3 Q7M4Z3]
+
−
** [http://www.uniprot.org/uniprot/P39461 P39461]
+
−
** [http://www.uniprot.org/uniprot/Q55674 Q55674]
+
−
** [http://www.uniprot.org/uniprot/P93033 P93033]
+
−
** [http://www.uniprot.org/uniprot/Q43180 Q43180]
+
−
** [http://www.uniprot.org/uniprot/O94552 O94552]
+
−
** [http://www.uniprot.org/uniprot/O66271 O66271]
+
−
** [http://www.uniprot.org/uniprot/Q60022 Q60022]
+
−
** [http://www.uniprot.org/uniprot/P07343 P07343]
+
−
** [http://www.uniprot.org/uniprot/P08417 P08417]
+
−
** [http://www.uniprot.org/uniprot/P05042 P05042]
+
−
** [http://www.uniprot.org/uniprot/P0AC33 P0AC33]
+
−
** [http://www.uniprot.org/uniprot/P10173 P10173]
+
−
** [http://www.uniprot.org/uniprot/P14408 P14408]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=pol-related}}
+
−
{{#set: ec number=EC-4.2.1.2}}
+
−
{{#set: common name=fumarate hydration|malate dehydration}}
+
−
{{#set: gene associated=Tiso_gene_6720|Tiso_gene_3691}}
+
−
{{#set: in pathway=FERMENTATION-PWY|PWY-561|PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|P105-PWY|PWY-6969|PWY-6728|REDCITCYC|PWY-7254|P108-PWY|PWY-5690|PWY66-398|TCA}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:45, 21 March 2018

Reaction RXN-11839

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • trna_pseudouridinesynthase
    • trna_pseudouridine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11839&oldid=43598"