Difference between revisions of "RXN-11839"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14386 RXN-14386] == * direction: ** LEFT-TO-RIGHT * common name: ** cysteine_mitochondrial ** c...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11839 RXN-11839] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_pseudouridinesynthase...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14386 RXN-14386] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11839 RXN-11839] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** cysteine_mitochondrial
+
** trna_pseudouridinesynthase
−
** cysteine_desulfurase_for_iron-sulfur_cluster_formation_suf
+
** trna_pseudouridine_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.8.1.7 EC-2.8.1.7]
+
** [http://enzyme.expasy.org/EC/5.4.99.25 EC-5.4.99.25]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[S-CD-S-SP-Complex]][c] '''=>''' 1 [[CD-2S-SP-Complex]][c]
+
** 1 [[tRNA-uridine55]][c] '''=>''' 1 [[tRNA-pseudouridine55]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an S-sulfanyl-[cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex[c] '''=>''' 1 a [cysteine desulfurase]-(S-sulfanyl)2-[disordered-form scaffold protein] complex[c]
+
** 1 a uridine55 in tRNA[c] '''=>''' 1 a pseudouridine55 in tRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_11478]]
+
* Gene: [[Tiso_gene_2988]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[annotation-experimental_annotation]]
+
* Gene: [[Tiso_gene_4021]]
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_14710]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_4284]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[annotation-experimental_annotation]]
+
* Gene: [[Tiso_gene_9833]]
−
*** Assignment: EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-esiliculosus]]
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_11913]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_19622]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_18959]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_4020]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7250]], [2Fe-2S] iron-sulfur cluster biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7250 PWY-7250]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=cysteine_mitochondrial}}
+
{{#set: common name=trna_pseudouridinesynthase}}
−
{{#set: common name=cysteine_desulfurase_for_iron-sulfur_cluster_formation_suf}}
+
{{#set: common name=trna_pseudouridine_synthase}}
−
{{#set: ec number=EC-2.8.1.7}}
+
{{#set: ec number=EC-5.4.99.25}}
−
{{#set: gene associated=Tiso_gene_11478|Tiso_gene_14710|Tiso_gene_4284}}
+
{{#set: gene associated=Tiso_gene_2988|Tiso_gene_4021|Tiso_gene_9833|Tiso_gene_11913|Tiso_gene_19622|Tiso_gene_18959|Tiso_gene_4020}}
−
{{#set: in pathway=PWY-7250}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:45, 21 March 2018

Reaction RXN-11839

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • trna_pseudouridinesynthase
    • trna_pseudouridine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11839&oldid=43598"