Difference between revisions of "SUPEROX-DISMUT-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_14505 == * left end position: ** 1572 * transcription direction: ** POSITIVE * right end position: ** 3270 * centisome position: ** 28.0363...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUPEROX-DISMUT-RXN SUPEROX-DISMUT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** superoxid...")
 
(4 intermediate revisions by the same user not shown)
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−
[[Category:Gene]]
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[[Category:Reaction]]
−
== Gene Tiso_gene_14505 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUPEROX-DISMUT-RXN SUPEROX-DISMUT-RXN] ==
−
* left end position:
+
* direction:
−
** 1572
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** superoxide_dismutase
−
* right end position:
+
** ORF
−
** 3270
+
* ec number:
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/1.15.1.1 EC-1.15.1.1]
−
** 28.036383   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[PEPDEPHOS-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 2 [[PROTON]][c] '''+''' 2 [[SUPER-OXIDE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c]
−
***ec-number
+
* With common name(s):
−
* [[RXN-14117]]
+
** 2 H+[c] '''+''' 2 superoxide[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 oxygen[c]
−
** in-silico_annotation
+
 
−
***ec-number
+
== Genes associated with this reaction  ==
−
* [[RXN-14192]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_3587]]
−
***ec-number
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-14207]]
+
*** Assignment: EC-NUMBER
−
** in-silico_annotation
+
** Source: [[annotation-experimental_annotation]]
−
***ec-number
+
*** Assignment: EC-NUMBER
−
== Pathways associated ==
+
* Gene: [[Tiso_gene_15757]]
−
* [[PWY-1042]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[P341-PWY]]
+
*** Assignment: EC-NUMBER
−
* [[PWY-2221]]
+
** Source: [[orthology-esiliculosus]]
−
* [[GLYCOLYSIS]]
+
* Gene: [[Tiso_gene_12651]]
−
* [[PWY-6901]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[ANAGLYCOLYSIS-PWY]]
+
*** Assignment: EC-NUMBER
−
* [[P124-PWY]]
+
** Source: [[orthology-synechocystis]]
−
* [[NPGLUCAT-PWY]]
+
** Source: [[orthology-esiliculosus]]
−
* [[PWY-7383]]
+
* Gene: [[Tiso_gene_20023]]
−
* [[PWY-6886]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[PWY-5723]]
+
*** Assignment: EC-NUMBER
−
* [[FERMENTATION-PWY]]
+
* Gene: [[Tiso_gene_12652]]
−
* [[PWY-7218]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[PWY-6142]]
+
*** Assignment: EC-NUMBER
−
* [[P122-PWY]]
+
** Source: [[orthology-synechocystis]]
−
* [[PWY-5484]]
+
** Source: [[orthology-esiliculosus]]
−
* [[PWY-7003]]
+
== Pathways  ==
 +
* [[DETOX1-PWY]], superoxide radicals degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6854]], ethylene biosynthesis III (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6854 PWY-6854]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[DETOX1-PWY-1]], reactive oxygen species degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=1572}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20696 20696]
−
{{#set: right end position=3270}}
+
* LIGAND-RXN:
−
{{#set: centisome position=28.036383    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00275 R00275]
−
{{#set: reaction associated=PEPDEPHOS-RXN|RXN-14117|RXN-14192|RXN-14207}}
+
* UNIPROT:
−
{{#set: pathway associated=PWY-1042|P341-PWY|PWY-2221|GLYCOLYSIS|PWY-6901|ANAGLYCOLYSIS-PWY|P124-PWY|NPGLUCAT-PWY|PWY-7383|PWY-6886|PWY-5723|FERMENTATION-PWY|PWY-7218|PWY-6142|P122-PWY|PWY-5484|PWY-7003}}
+
** [http://www.uniprot.org/uniprot/P11419 P11419]
 +
** [http://www.uniprot.org/uniprot/P09670 P09670]
 +
** [http://www.uniprot.org/uniprot/P09213 P09213]
 +
** [http://www.uniprot.org/uniprot/P11428 P11428]
 +
** [http://www.uniprot.org/uniprot/P15453 P15453]
 +
** [http://www.uniprot.org/uniprot/P09737 P09737]
 +
** [http://www.uniprot.org/uniprot/P20379 P20379]
 +
** [http://www.uniprot.org/uniprot/P07509 P07509]
 +
** [http://www.uniprot.org/uniprot/P16026 P16026]
 +
** [http://www.uniprot.org/uniprot/P19666 P19666]
 +
** [http://www.uniprot.org/uniprot/P25841 P25841]
 +
** [http://www.uniprot.org/uniprot/P09738 P09738]
 +
** [http://www.uniprot.org/uniprot/P19665 P19665]
 +
** [http://www.uniprot.org/uniprot/P19685 P19685]
 +
** [http://www.uniprot.org/uniprot/P28755 P28755]
 +
** [http://www.uniprot.org/uniprot/P34107 P34107]
 +
** [http://www.uniprot.org/uniprot/P34697 P34697]
 +
** [http://www.uniprot.org/uniprot/P41979 P41979]
 +
** [http://www.uniprot.org/uniprot/Q08420 Q08420]
 +
** [http://www.uniprot.org/uniprot/Q01137 Q01137]
 +
** [http://www.uniprot.org/uniprot/P53652 P53652]
 +
** [http://www.uniprot.org/uniprot/Q7M4I8 Q7M4I8]
 +
** [http://www.uniprot.org/uniprot/P25842 P25842]
 +
** [http://www.uniprot.org/uniprot/P41980 P41980]
 +
** [http://www.uniprot.org/uniprot/P53641 P53641]
 +
** [http://www.uniprot.org/uniprot/P54375 P54375]
 +
** [http://www.uniprot.org/uniprot/O67149 O67149]
 +
** [http://www.uniprot.org/uniprot/Q9Z9C4 Q9Z9C4]
 +
** [http://www.uniprot.org/uniprot/Q9RU48 Q9RU48]
 +
** [http://www.uniprot.org/uniprot/Q9RUV2 Q9RUV2]
 +
** [http://www.uniprot.org/uniprot/P41978 P41978]
 +
** [http://www.uniprot.org/uniprot/P43725 P43725]
 +
** [http://www.uniprot.org/uniprot/O35023 O35023]
 +
** [http://www.uniprot.org/uniprot/O67470 O67470]
 +
** [http://www.uniprot.org/uniprot/Q9JUW9 Q9JUW9]
 +
** [http://www.uniprot.org/uniprot/P00442 P00442]
 +
** [http://www.uniprot.org/uniprot/P00449 P00449]
 +
** [http://www.uniprot.org/uniprot/P00445 P00445]
 +
** [http://www.uniprot.org/uniprot/P00447 P00447]
 +
** [http://www.uniprot.org/uniprot/P0AGD3 P0AGD3]
 +
** [http://www.uniprot.org/uniprot/P00448 P00448]
 +
** [http://www.uniprot.org/uniprot/P61851 P61851]
 +
** [http://www.uniprot.org/uniprot/P00446 P00446]
 +
** [http://www.uniprot.org/uniprot/P00443 P00443]
 +
** [http://www.uniprot.org/uniprot/P09224 P09224]
 +
** [http://www.uniprot.org/uniprot/P00441 P00441]
 +
** [http://www.uniprot.org/uniprot/P08294 P08294]
 +
** [http://www.uniprot.org/uniprot/P04179 P04179]
 +
** [http://www.uniprot.org/uniprot/P24704 P24704]
 +
** [http://www.uniprot.org/uniprot/P24705 P24705]
 +
** [http://www.uniprot.org/uniprot/P04178 P04178]
 +
** [http://www.uniprot.org/uniprot/P11964 P11964]
 +
** [http://www.uniprot.org/uniprot/P27084 P27084]
 +
** [http://www.uniprot.org/uniprot/P09678 P09678]
 +
** [http://www.uniprot.org/uniprot/P07895 P07895]
 +
** [http://www.uniprot.org/uniprot/P22233 P22233]
 +
** [http://www.uniprot.org/uniprot/P07505 P07505]
 +
** [http://www.uniprot.org/uniprot/P03946 P03946]
 +
** [http://www.uniprot.org/uniprot/Q7M137 Q7M137]
 +
** [http://www.uniprot.org/uniprot/P43312 P43312]
 +
** [http://www.uniprot.org/uniprot/Q9ZKE6 Q9ZKE6]
 +
** [http://www.uniprot.org/uniprot/P57005 P57005]
 +
** [http://www.uniprot.org/uniprot/P18868 P18868]
 +
** [http://www.uniprot.org/uniprot/O66602 O66602]
 +
** [http://www.uniprot.org/uniprot/Q9ZD15 Q9ZD15]
 +
** [http://www.uniprot.org/uniprot/Q9Y8H8 Q9Y8H8]
 +
** [http://www.uniprot.org/uniprot/Q59623 Q59623]
 +
** [http://www.uniprot.org/uniprot/Q9JZV6 Q9JZV6]
 +
** [http://www.uniprot.org/uniprot/O84296 O84296]
 +
** [http://www.uniprot.org/uniprot/P53640 P53640]
 +
** [http://www.uniprot.org/uniprot/P11796 P11796]
 +
** [http://www.uniprot.org/uniprot/Q59081 Q59081]
 +
** [http://www.uniprot.org/uniprot/P24702 P24702]
 +
** [http://www.uniprot.org/uniprot/Q59165 Q59165]
 +
** [http://www.uniprot.org/uniprot/P37369 P37369]
 +
** [http://www.uniprot.org/uniprot/P42821 P42821]
 +
** [http://www.uniprot.org/uniprot/Q59307 Q59307]
 +
** [http://www.uniprot.org/uniprot/Q59315 Q59315]
 +
** [http://www.uniprot.org/uniprot/P41976 P41976]
 +
** [http://www.uniprot.org/uniprot/P09671 P09671]
 +
** [http://www.uniprot.org/uniprot/P07632 P07632]
 +
** [http://www.uniprot.org/uniprot/P28764 P28764]
 +
** [http://www.uniprot.org/uniprot/P80293 P80293]
 +
** [http://www.uniprot.org/uniprot/Q42683 Q42683]
 +
** [http://www.uniprot.org/uniprot/P31161 P31161]
 +
** [http://www.uniprot.org/uniprot/Q59452 Q59452]
 +
** [http://www.uniprot.org/uniprot/P0AGD1 P0AGD1]
 +
** [http://www.uniprot.org/uniprot/Q59094 Q59094]
 +
** [http://www.uniprot.org/uniprot/O30826 O30826]
 +
** [http://www.uniprot.org/uniprot/P34461 P34461]
 +
** [http://www.uniprot.org/uniprot/Q27538 Q27538]
 +
** [http://www.uniprot.org/uniprot/Q9ZWM8 Q9ZWM8]
 +
** [http://www.uniprot.org/uniprot/P08228 P08228]
 +
** [http://www.uniprot.org/uniprot/P27082 P27082]
 +
** [http://www.uniprot.org/uniprot/P31108 P31108]
 +
** [http://www.uniprot.org/uniprot/Q7M1R5 Q7M1R5]
 +
** [http://www.uniprot.org/uniprot/P28759 P28759]
 +
** [http://www.uniprot.org/uniprot/Q8LEP0 Q8LEP0]
 +
** [http://www.uniprot.org/uniprot/Q7M4X8 Q7M4X8]
 +
** [http://www.uniprot.org/uniprot/Q7M0X9 Q7M0X9]
 +
** [http://www.uniprot.org/uniprot/P22799 P22799]
 +
** [http://www.uniprot.org/uniprot/Q7M1U7 Q7M1U7]
 +
** [http://www.uniprot.org/uniprot/Q7M236 Q7M236]
 +
** [http://www.uniprot.org/uniprot/Q7M1U6 Q7M1U6]
 +
** [http://www.uniprot.org/uniprot/Q7M1U5 Q7M1U5]
 +
** [http://www.uniprot.org/uniprot/P09223 P09223]
 +
** [http://www.uniprot.org/uniprot/P10791 P10791]
 +
** [http://www.uniprot.org/uniprot/P10792 P10792]
 +
** [http://www.uniprot.org/uniprot/Q43273 Q43273]
 +
** [http://www.uniprot.org/uniprot/P11418 P11418]
 +
** [http://www.uniprot.org/uniprot/P13926 P13926]
 +
** [http://www.uniprot.org/uniprot/P61852 P61852]
 +
** [http://www.uniprot.org/uniprot/P13367 P13367]
 +
** [http://www.uniprot.org/uniprot/P23345 P23345]
 +
** [http://www.uniprot.org/uniprot/P14830 P14830]
 +
** [http://www.uniprot.org/uniprot/P15107 P15107]
 +
** [http://www.uniprot.org/uniprot/P23417 P23417]
 +
** [http://www.uniprot.org/uniprot/P17670 P17670]
 +
** [http://www.uniprot.org/uniprot/P24706 P24706]
 +
** [http://www.uniprot.org/uniprot/P28763 P28763]
 +
** [http://www.uniprot.org/uniprot/P24669 P24669]
 +
** [http://www.uniprot.org/uniprot/P24707 P24707]
 +
** [http://www.uniprot.org/uniprot/P28757 P28757]
 +
** [http://www.uniprot.org/uniprot/P28760 P28760]
 +
** [http://www.uniprot.org/uniprot/P28756 P28756]
 +
** [http://www.uniprot.org/uniprot/P28766 P28766]
 +
** [http://www.uniprot.org/uniprot/P28762 P28762]
 +
** [http://www.uniprot.org/uniprot/Q00637 Q00637]
 +
** [http://www.uniprot.org/uniprot/P28761 P28761]
 +
** [http://www.uniprot.org/uniprot/P28765 P28765]
 +
** [http://www.uniprot.org/uniprot/P28767 P28767]
 +
** [http://www.uniprot.org/uniprot/P28768 P28768]
 +
** [http://www.uniprot.org/uniprot/P28758 P28758]
 +
** [http://www.uniprot.org/uniprot/Q7M240 Q7M240]
 +
** [http://www.uniprot.org/uniprot/Q7M239 Q7M239]
 +
** [http://www.uniprot.org/uniprot/Q7M237 Q7M237]
 +
** [http://www.uniprot.org/uniprot/Q7M238 Q7M238]
 +
** [http://www.uniprot.org/uniprot/P80174 P80174]
 +
** [http://www.uniprot.org/uniprot/P09212 P09212]
 +
** [http://www.uniprot.org/uniprot/Q08713 Q08713]
 +
** [http://www.uniprot.org/uniprot/P33431 P33431]
 +
** [http://www.uniprot.org/uniprot/P35017 P35017]
 +
** [http://www.uniprot.org/uniprot/Q07796 Q07796]
 +
** [http://www.uniprot.org/uniprot/P53639 P53639]
 +
** [http://www.uniprot.org/uniprot/P14831 P14831]
 +
** [http://www.uniprot.org/uniprot/Q07182 Q07182]
 +
** [http://www.uniprot.org/uniprot/P41981 P41981]
 +
** [http://www.uniprot.org/uniprot/Q9R4U1 Q9R4U1]
 +
** [http://www.uniprot.org/uniprot/Q60036 Q60036]
 +
** [http://www.uniprot.org/uniprot/P53643 P53643]
 +
** [http://www.uniprot.org/uniprot/P53644 P53644]
 +
** [http://www.uniprot.org/uniprot/P53645 P53645]
 +
** [http://www.uniprot.org/uniprot/P53646 P53646]
 +
** [http://www.uniprot.org/uniprot/P53649 P53649]
 +
** [http://www.uniprot.org/uniprot/P53647 P53647]
 +
** [http://www.uniprot.org/uniprot/P46728 P46728]
 +
** [http://www.uniprot.org/uniprot/P53650 P53650]
 +
** [http://www.uniprot.org/uniprot/P53648 P53648]
 +
** [http://www.uniprot.org/uniprot/P41977 P41977]
 +
** [http://www.uniprot.org/uniprot/Q64466 Q64466]
 +
** [http://www.uniprot.org/uniprot/Q7M235 Q7M235]
 +
** [http://www.uniprot.org/uniprot/Q59433 Q59433]
 +
** [http://www.uniprot.org/uniprot/P0A4J5 P0A4J5]
 +
** [http://www.uniprot.org/uniprot/Q59806 Q59806]
 +
** [http://www.uniprot.org/uniprot/P0A4J6 P0A4J6]
 +
** [http://www.uniprot.org/uniprot/Q59434 Q59434]
 +
** [http://www.uniprot.org/uniprot/Q43779 Q43779]
 +
** [http://www.uniprot.org/uniprot/Q27740 Q27740]
 +
** [http://www.uniprot.org/uniprot/Q27460 Q27460]
 +
** [http://www.uniprot.org/uniprot/Q59519 Q59519]
 +
** [http://www.uniprot.org/uniprot/P80566 P80566]
 +
** [http://www.uniprot.org/uniprot/P93801 P93801]
 +
** [http://www.uniprot.org/uniprot/P77968 P77968]
 +
** [http://www.uniprot.org/uniprot/P93407 P93407]
 +
** [http://www.uniprot.org/uniprot/Q43008 Q43008]
 +
** [http://www.uniprot.org/uniprot/Q43803 Q43803]
 +
** [http://www.uniprot.org/uniprot/Q43121 Q43121]
 +
** [http://www.uniprot.org/uniprot/P21276 P21276]
 +
** [http://www.uniprot.org/uniprot/Q96123 Q96123]
 +
** [http://www.uniprot.org/uniprot/Q96185 Q96185]
 +
** [http://www.uniprot.org/uniprot/Q02610 Q02610]
 +
** [http://www.uniprot.org/uniprot/O24400 O24400]
 +
** [http://www.uniprot.org/uniprot/P93606 P93606]
 +
** [http://www.uniprot.org/uniprot/O22373 O22373]
 +
** [http://www.uniprot.org/uniprot/O49066 O49066]
 +
** [http://www.uniprot.org/uniprot/Q42684 Q42684]
 +
** [http://www.uniprot.org/uniprot/O65324 O65324]
 +
** [http://www.uniprot.org/uniprot/O65768 O65768]
 +
** [http://www.uniprot.org/uniprot/Q42672 Q42672]
 +
** [http://www.uniprot.org/uniprot/O81233 O81233]
 +
** [http://www.uniprot.org/uniprot/O23785 O23785]
 +
** [http://www.uniprot.org/uniprot/Q42862 Q42862]
 +
** [http://www.uniprot.org/uniprot/O49044 O49044]
 +
** [http://www.uniprot.org/uniprot/Q90023 Q90023]
 +
** [http://www.uniprot.org/uniprot/Q9YMI3 Q9YMI3]
 +
** [http://www.uniprot.org/uniprot/O92400 O92400]
 +
** [http://www.uniprot.org/uniprot/O51917 O51917]
 +
** [http://www.uniprot.org/uniprot/P61502 P61502]
 +
** [http://www.uniprot.org/uniprot/O08459 O08459]
 +
** [http://www.uniprot.org/uniprot/O08461 O08461]
 +
** [http://www.uniprot.org/uniprot/P53653 P53653]
 +
** [http://www.uniprot.org/uniprot/Q9LYK8 Q9LYK8]
 +
** [http://www.uniprot.org/uniprot/Q03302 Q03302]
 +
** [http://www.uniprot.org/uniprot/Q03300 Q03300]
 +
** [http://www.uniprot.org/uniprot/Q03301 Q03301]
 +
** [http://www.uniprot.org/uniprot/Q9UQX0 Q9UQX0]
 +
** [http://www.uniprot.org/uniprot/O81235 O81235]
 +
** [http://www.uniprot.org/uniprot/Q9SM64 Q9SM64]
 +
** [http://www.uniprot.org/uniprot/Q9STB5 Q9STB5]
 +
** [http://www.uniprot.org/uniprot/Q9M532 Q9M532]
 +
** [http://www.uniprot.org/uniprot/O82584 O82584]
 +
** [http://www.uniprot.org/uniprot/O82519 O82519]
 +
** [http://www.uniprot.org/uniprot/O78310 O78310]
 +
** [http://www.uniprot.org/uniprot/O81236 O81236]
 +
** [http://www.uniprot.org/uniprot/O81240 O81240]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=superoxide_dismutase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-1.15.1.1}}
 +
{{#set: gene associated=Tiso_gene_3587|Tiso_gene_15757|Tiso_gene_12651|Tiso_gene_20023|Tiso_gene_12652}}
 +
{{#set: in pathway=DETOX1-PWY|PWY-6854|DETOX1-PWY-1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:46, 21 March 2018

Reaction SUPEROX-DISMUT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • superoxide_dismutase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • DETOX1-PWY, superoxide radicals degradation: DETOX1-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6854, ethylene biosynthesis III (microbes): PWY-6854
    • 3 reactions found over 7 reactions in the full pathway
  • DETOX1-PWY-1, reactive oxygen species degradation: DETOX1-PWY-1
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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