Difference between revisions of "Tiso gene 1960"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == * direction: ** REVERSIBLE * common name: ** succinyl-_ligase * e...")
(Created page with "Category:Gene == Gene Tiso_gene_1960 == * right end position: ** 20506 * transcription direction: ** POSITIVE * left end position: ** 16698 * centisome position: ** 79.412...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] ==
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== Gene Tiso_gene_1960 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 20506
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* common name:
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* transcription direction:
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** succinyl-_ligase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5]
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** 16698
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* centisome position:
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** 79.412186   
 
* Synonym(s):
 
* Synonym(s):
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** Succinate thiokinase
 
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** succinyl CoA synthesis
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[SUC-COA]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 succinate[c] '''+''' 1 coenzyme A[c] '''<=>''' 1 succinyl-CoA[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* [[Tiso_gene_15846]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-12196]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** [[pantograph]]-[[athaliana]]
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* Reaction: [[RXN0-5462]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_11866]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
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** '''5''' reactions found over '''12''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=20506}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17661 17661]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=16698}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
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{{#set: centisome position=79.412186    }}
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* UNIPROT:
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/O28098 O28098]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/P53594 P53594]
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** [http://www.uniprot.org/uniprot/O28733 O28733]
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** [http://www.uniprot.org/uniprot/P45101 P45101]
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** [http://www.uniprot.org/uniprot/P45102 P45102]
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** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
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** [http://www.uniprot.org/uniprot/Q58643 Q58643]
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** [http://www.uniprot.org/uniprot/O26663 O26663]
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** [http://www.uniprot.org/uniprot/P80886 P80886]
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** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
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** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
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** [http://www.uniprot.org/uniprot/P80865 P80865]
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** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
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** [http://www.uniprot.org/uniprot/O67729 O67729]
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** [http://www.uniprot.org/uniprot/O67546 O67546]
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** [http://www.uniprot.org/uniprot/P53593 P53593]
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** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
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** [http://www.uniprot.org/uniprot/P0A836 P0A836]
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** [http://www.uniprot.org/uniprot/O82662 O82662]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=succinyl-_ligase}}
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{{#set: ec number=EC-6.2.1.5}}
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{{#set: common name=Succinate thiokinase|succinyl CoA synthesis}}
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{{#set: gene associated=Tiso_gene_15846|Tiso_gene_11866}}
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{{#set: in pathway=PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|PWY-5690|PWY-6969|PWY-6728|PWY-5538|TCA|PWY66-398|PWY-5537}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:46, 21 March 2018

Gene Tiso_gene_1960

  • right end position:
    • 20506
  • transcription direction:
    • POSITIVE
  • left end position:
    • 16698
  • centisome position:
    • 79.412186
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1960&oldid=43702"