Difference between revisions of "RXN-16017"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11842 RXN-11842] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_pseudouridine_synthase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16017 RXN-16017] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11842 RXN-11842] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16017 RXN-16017] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** trna_pseudouridine_synthase
 
** trna_pseudouridinesynthase
 
 
* ec number:
 
* ec number:
** [http://enzyme.expasy.org/EC/5.4.99.28 EC-5.4.99.28]
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** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[Uridine32-in-tRNA]][c] '''=>''' 1 [[tRNA-pseudouridine32]][c]
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** 14 [[NADPH]][c] '''+''' 10 [[MALONYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 23 [[PROTON]][c] '''=>''' 11 [[CO-A]][c] '''+''' 14 [[NADP]][c] '''+''' 9 [[WATER]][c] '''+''' 1 [[CPD-10244]][c] '''+''' 10 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
** 1 a uridine32 in tRNA[c] '''=>''' 1 a pseudouridine32 in tRNA[c]
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** 14 NADPH[c] '''+''' 10 malonyl-CoA[c] '''+''' 1 acetyl-CoA[c] '''+''' 23 H+[c] '''=>''' 11 coenzyme A[c] '''+''' 14 NADP+[c] '''+''' 9 H2O[c] '''+''' 1 docosahexaenoate[c] '''+''' 10 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[Tiso_gene_9833]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_4020]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_18959]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_4021]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_2988]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_11913]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
* [[Tiso_gene_19622]]
 
** IN-SILICO_ANNOTATION
 
***AUTOMATED-NAME-MATCH
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7585]], docosahexaenoate biosynthesis II (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7585 PWY-7585]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[annotation]]
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* Category: [[gap-filling]]
** Source: [[annotation-in-silico_annotation]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
*** Tool: [[pathwaytools]]
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*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=trna_pseudouridine_synthase}}
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{{#set: ec number=EC-2.3.1}}
{{#set: common name=trna_pseudouridinesynthase}}
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{{#set: in pathway=PWY-7585}}
{{#set: ec number=EC-5.4.99.28}}
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{{#set: reconstruction category=gap-filling}}
{{#set: gene associated=Tiso_gene_9833|Tiso_gene_4020|Tiso_gene_18959|Tiso_gene_4021|Tiso_gene_2988|Tiso_gene_11913|Tiso_gene_19622}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
{{#set: in pathway=}}
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{{#set: reconstruction tool=meneco}}
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 19:47, 21 March 2018

Reaction RXN-16017

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-7585, docosahexaenoate biosynthesis II (bacteria): PWY-7585
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links