Difference between revisions of "Tiso gene 5046"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=13-BETA-GLUCAN-SYNTHASE-RXN 13-BETA-GLUCAN-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Gene == Gene Tiso_gene_5046 == * right end position: ** 11340 * transcription direction: ** POSITIVE * left end position: ** 8481 * centisome position: ** 60.6956...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=13-BETA-GLUCAN-SYNTHASE-RXN 13-BETA-GLUCAN-SYNTHASE-RXN] ==
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== Gene Tiso_gene_5046 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 11340
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* common name:
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* transcription direction:
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** -beta-glucan_synthase_component_gls2
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** POSITIVE
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** callose_synthase
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* left end position:
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** callose
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** 8481
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** beta-glucan_synthesis-associated
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* centisome position:
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* ec number:
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** 60.695625   
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** [http://enzyme.expasy.org/EC/2.4.1.34 EC-2.4.1.34]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[6.1.1.24-RXN]]
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** 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[CPD-12575]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[1-3-beta-D-Glucans]][c]
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* With common name(s):
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** 1 a 1,3-β-D-glucan[c] '''+''' 1 UDP-α-D-glucose[c] '''=>''' 1 UDP[c] '''+''' 1 a 1,3-β-D-glucan[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_7966]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_7603]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5462]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3322]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5460]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_7967]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-6773]], 1,3-β-D-glucan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6773 PWY-6773]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[GLURS-RXN]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[TRNA-CHARGING-PWY]]
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* [[PWY-5188]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=11340}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03118 R03118]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: left end position=8481}}
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** [http://www.uniprot.org/uniprot/P38631 P38631]
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{{#set: centisome position=60.695625    }}
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** [http://www.uniprot.org/uniprot/P40989 P40989]
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{{#set: reaction associated=6.1.1.24-RXN|GLURS-RXN}}
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** [http://www.uniprot.org/uniprot/Q10287 Q10287]
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{{#set: pathway associated=TRNA-CHARGING-PWY|PWY-5188}}
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** [http://www.uniprot.org/uniprot/P38678 P38678]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=-beta-glucan_synthase_component_gls2}}
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{{#set: common name=callose_synthase}}
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{{#set: common name=callose}}
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{{#set: common name=beta-glucan_synthesis-associated}}
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{{#set: ec number=EC-2.4.1.34}}
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{{#set: gene associated=Tiso_gene_7966|Tiso_gene_7603|Tiso_gene_5462|Tiso_gene_3322|Tiso_gene_5460|Tiso_gene_7967}}
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{{#set: in pathway=PWY-6773}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:47, 21 March 2018

Gene Tiso_gene_5046

  • right end position:
    • 11340
  • transcription direction:
    • POSITIVE
  • left end position:
    • 8481
  • centisome position:
    • 60.695625
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5046&oldid=43728"