Difference between revisions of "PHOSGLYPHOS-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_5529 == * left end position: ** 12112 * transcription direction: ** POSITIVE * right end position: ** 12620 * centisome position: ** 91.006...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] == * direction: ** REVERSIBLE * common name: ** phosphoglycerate_c...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_5529 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] ==
−
* left end position:
+
* direction:
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** 12112
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** REVERSIBLE
−
* transcription direction:
+
* common name:
−
** POSITIVE
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** phosphoglycerate_chloroplastic
−
* right end position:
+
** phosphoglycerate_kinase
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** 12620
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* ec number:
−
* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.2.3 EC-2.7.2.3]
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** 91.00609   
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* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[ADENOSINETRIPHOSPHATASE-RXN]]
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* With identifiers:
−
** [[pantograph]]-[[esiliculosus]]
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** 1 [[G3P]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[DPG]][c]
−
* [[ATPASE-RXN]]
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* With common name(s):
−
** in-silico_annotation
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** 1 3-phospho-D-glycerate[c] '''+''' 1 ATP[c] '''<=>''' 1 ADP[c] '''+''' 1 1,3-bisphospho-D-glycerate[c]
−
***ec-number
+
 
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[esiliculosus]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN-12195]]
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* Gene: [[Tiso_gene_3526]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-12196]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
−
* [[RXN0-5462]]
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*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_18264]]
−
== Pathways associated ==
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** Source: [[annotation-in-silico_annotation]]
−
* [[PWY-7210]]
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*** Assignment: EC-NUMBER
−
* [[PWY-7198]]
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* Gene: [[Tiso_gene_3527]]
−
* [[PWY-6545]]
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** Source: [[annotation-in-silico_annotation]]
−
* [[PWY-7184]]
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*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_18263]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12104]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14642]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''11''' reactions found over '''15''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=12112}}
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* RHEA:
−
{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14801 14801]
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{{#set: right end position=12620}}
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* LIGAND-RXN:
−
{{#set: centisome position=91.00609    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01512 R01512]
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{{#set: reaction associated=ADENOSINETRIPHOSPHATASE-RXN|ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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* UNIPROT:
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{{#set: pathway associated=PWY-7210|PWY-7198|PWY-6545|PWY-7184}}
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** [http://www.uniprot.org/uniprot/P11977 P11977]
 +
** [http://www.uniprot.org/uniprot/P09411 P09411]
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** [http://www.uniprot.org/uniprot/P09041 P09041]
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** [http://www.uniprot.org/uniprot/P07205 P07205]
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** [http://www.uniprot.org/uniprot/P16617 P16617]
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** [http://www.uniprot.org/uniprot/Q37743 Q37743]
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** [http://www.uniprot.org/uniprot/Q58058 Q58058]
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** [http://www.uniprot.org/uniprot/P56154 P56154]
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** [http://www.uniprot.org/uniprot/O29119 O29119]
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** [http://www.uniprot.org/uniprot/Q01655 Q01655]
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** [http://www.uniprot.org/uniprot/Q9URB3 Q9URB3]
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** [http://www.uniprot.org/uniprot/P47542 P47542]
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** [http://www.uniprot.org/uniprot/O27121 O27121]
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** [http://www.uniprot.org/uniprot/Q9PMQ5 Q9PMQ5]
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** [http://www.uniprot.org/uniprot/P40924 P40924]
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** [http://www.uniprot.org/uniprot/P43726 P43726]
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** [http://www.uniprot.org/uniprot/O66519 O66519]
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** [http://www.uniprot.org/uniprot/Q9JWS8 Q9JWS8]
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** [http://www.uniprot.org/uniprot/Q9CIW1 Q9CIW1]
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** [http://www.uniprot.org/uniprot/P36204 P36204]
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** [http://www.uniprot.org/uniprot/Q59181 Q59181]
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** [http://www.uniprot.org/uniprot/P50319 P50319]
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** [http://www.uniprot.org/uniprot/P50310 P50310]
 +
** [http://www.uniprot.org/uniprot/P51903 P51903]
 +
** [http://www.uniprot.org/uniprot/P18912 P18912]
 +
** [http://www.uniprot.org/uniprot/P41757 P41757]
 +
** [http://www.uniprot.org/uniprot/P27362 P27362]
 +
** [http://www.uniprot.org/uniprot/P24269 P24269]
 +
** [http://www.uniprot.org/uniprot/P00560 P00560]
 +
** [http://www.uniprot.org/uniprot/P25055 P25055]
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** [http://www.uniprot.org/uniprot/Q01604 Q01604]
 +
** [http://www.uniprot.org/uniprot/P00558 P00558]
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** [http://www.uniprot.org/uniprot/P07377 P07377]
 +
** [http://www.uniprot.org/uniprot/P07378 P07378]
 +
** [http://www.uniprot.org/uniprot/P14828 P14828]
 +
** [http://www.uniprot.org/uniprot/P09404 P09404]
 +
** [http://www.uniprot.org/uniprot/P29408 P29408]
 +
** [http://www.uniprot.org/uniprot/P20972 P20972]
 +
** [http://www.uniprot.org/uniprot/P20971 P20971]
 +
** [http://www.uniprot.org/uniprot/P24590 P24590]
 +
** [http://www.uniprot.org/uniprot/P29409 P29409]
 +
** [http://www.uniprot.org/uniprot/P33161 P33161]
 +
** [http://www.uniprot.org/uniprot/P29405 P29405]
 +
** [http://www.uniprot.org/uniprot/P50317 P50317]
 +
** [http://www.uniprot.org/uniprot/P50315 P50315]
 +
** [http://www.uniprot.org/uniprot/P29407 P29407]
 +
** [http://www.uniprot.org/uniprot/P61884 P61884]
 +
** [http://www.uniprot.org/uniprot/Q42542 Q42542]
 +
** [http://www.uniprot.org/uniprot/P50318 P50318]
 +
** [http://www.uniprot.org/uniprot/P46712 P46712]
 +
** [http://www.uniprot.org/uniprot/P78018 P78018]
 +
** [http://www.uniprot.org/uniprot/Q49073 Q49073]
 +
** [http://www.uniprot.org/uniprot/Q42961 Q42961]
 +
** [http://www.uniprot.org/uniprot/Q42962 Q42962]
 +
** [http://www.uniprot.org/uniprot/O81394 O81394]
 +
** [http://www.uniprot.org/uniprot/P41758 P41758]
 +
** [http://www.uniprot.org/uniprot/O32756 O32756]
 +
** [http://www.uniprot.org/uniprot/P38667 P38667]
 +
** [http://www.uniprot.org/uniprot/P08966 P08966]
 +
** [http://www.uniprot.org/uniprot/P08967 P08967]
 +
** [http://www.uniprot.org/uniprot/P0A799 P0A799]
 +
** [http://www.uniprot.org/uniprot/P09188 P09188]
 +
** [http://www.uniprot.org/uniprot/P14228 P14228]
 +
** [http://www.uniprot.org/uniprot/P08891 P08891]
 +
** [http://www.uniprot.org/uniprot/P08892 P08892]
 +
** [http://www.uniprot.org/uniprot/P08893 P08893]
 +
** [http://www.uniprot.org/uniprot/P12782 P12782]
 +
** [http://www.uniprot.org/uniprot/P12783 P12783]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=phosphoglycerate_chloroplastic}}
 +
{{#set: common name=phosphoglycerate_kinase}}
 +
{{#set: ec number=EC-2.7.2.3}}
 +
{{#set: gene associated=Tiso_gene_3526|Tiso_gene_18264|Tiso_gene_3527|Tiso_gene_18263|Tiso_gene_12104|Tiso_gene_14642}}
 +
{{#set: in pathway=PWY-1042|PWY66-399|GLUCONEO-PWY|SUCSYN-PWY|PWY-6901|P124-PWY|GLYCOLYSIS|PWY-6886|CALVIN-PWY|ANAGLYCOLYSIS-PWY|P122-PWY|P185-PWY|PWY-5484|PWY-7003}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:47, 21 March 2018

Reaction PHOSGLYPHOS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • phosphoglycerate_chloroplastic
    • phosphoglycerate_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-phospho-D-glycerate[c] + 1 ATP[c] <=> 1 ADP[c] + 1 1,3-bisphospho-D-glycerate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 10 reactions found over 12 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis): SUCSYN-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 8 reactions found over 12 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
    • 8 reactions found over 11 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 14 reactions found over 18 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol: PWY-7003
    • 8 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PHOSGLYPHOS-RXN&oldid=43734"