Difference between revisions of "CPD-11517"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == * direction: ** REVERSIBLE * common name: ** succinyl-_ligase * e...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11517 CPD-11517] == * smiles: ** CCC=CCC4(C(=O)CCC(CCCCCCCC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11517 CPD-11517] ==
−
* direction:
+
* smiles:
−
** REVERSIBLE
+
** CCC=CCC4(C(=O)CCC(CCCCCCCC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)
 
* common name:
 
* common name:
−
** succinyl-_ligase
+
** 3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA
−
* ec number:
+
* inchi key:
−
** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5]
+
** InChIKey=JZIQDJLBFKTBAK-HUKDABTFSA-J
 +
* molecular weight:
 +
** 1039.92   
 
* Synonym(s):
 
* Synonym(s):
−
** Succinate thiokinase
+
** oxopentenyl-cyclopentane-octanoyl-CoA
−
** succinyl CoA synthesis
+
** 8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoyl-CoA
 +
** OPC-8:0-CoA
 +
** OPC8-CoA
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[RXN-10696]]
−
** 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
+
== Reaction(s) known to produce the compound ==
−
* With common name(s):
+
* [[RXN-10695]]
−
** 1 coenzyme A[c] '''+''' 1 succinate[c] '''+''' 1 ATP[c] '''<=>''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 succinyl-CoA[c]
+
== Reaction(s) of unknown directionality ==
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_11866]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_15846]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
== Pathways  ==
+
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
+
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
+
−
** '''7''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
+
−
** '''5''' reactions found over '''12''' reactions in the full pathway
+
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
+
−
** '''7''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
+
−
** '''9''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
+
−
** '''11''' reactions found over '''18''' reactions in the full pathway
+
−
* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
+
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
+
−
** '''7''' reactions found over '''10''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[creinhardtii]]
+
−
*** [[synechocystis]]
+
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* PUBCHEM:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17661 17661]
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=44237325 44237325]
−
* LIGAND-RXN:
+
{{#set: smiles=CCC=CCC4(C(=O)CCC(CCCCCCCC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
+
{{#set: common name=3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA}}
−
* UNIPROT:
+
{{#set: inchi key=InChIKey=JZIQDJLBFKTBAK-HUKDABTFSA-J}}
−
** [http://www.uniprot.org/uniprot/O28098 O28098]
+
{{#set: molecular weight=1039.92    }}
−
** [http://www.uniprot.org/uniprot/P53594 P53594]
+
{{#set: common name=oxopentenyl-cyclopentane-octanoyl-CoA|8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoyl-CoA|OPC-8:0-CoA|OPC8-CoA}}
−
** [http://www.uniprot.org/uniprot/O28733 O28733]
+
{{#set: consumed by=RXN-10696}}
−
** [http://www.uniprot.org/uniprot/P45101 P45101]
+
{{#set: produced by=RXN-10695}}
−
** [http://www.uniprot.org/uniprot/P45102 P45102]
+
−
** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
+
−
** [http://www.uniprot.org/uniprot/Q58643 Q58643]
+
−
** [http://www.uniprot.org/uniprot/O26663 O26663]
+
−
** [http://www.uniprot.org/uniprot/P80886 P80886]
+
−
** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
+
−
** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
+
−
** [http://www.uniprot.org/uniprot/P80865 P80865]
+
−
** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
+
−
** [http://www.uniprot.org/uniprot/O67729 O67729]
+
−
** [http://www.uniprot.org/uniprot/O67546 O67546]
+
−
** [http://www.uniprot.org/uniprot/P53593 P53593]
+
−
** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
+
−
** [http://www.uniprot.org/uniprot/P0A836 P0A836]
+
−
** [http://www.uniprot.org/uniprot/O82662 O82662]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=succinyl-_ligase}}
+
−
{{#set: ec number=EC-6.2.1.5}}
+
−
{{#set: common name=Succinate thiokinase|succinyl CoA synthesis}}
+
−
{{#set: gene associated=Tiso_gene_11866|Tiso_gene_15846}}
+
−
{{#set: in pathway=PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|PWY-6969|PWY-5537|PWY-6728|PWY-5538|PWY-5690|PWY66-398|TCA}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:47, 21 March 2018

Metabolite CPD-11517

  • smiles:
    • CCC=CCC4(C(=O)CCC(CCCCCCCC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)
  • common name:
    • 3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA
  • inchi key:
    • InChIKey=JZIQDJLBFKTBAK-HUKDABTFSA-J
  • molecular weight:
    • 1039.92
  • Synonym(s):
    • oxopentenyl-cyclopentane-octanoyl-CoA
    • 8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoyl-CoA
    • OPC-8:0-CoA
    • OPC8-CoA

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CCC=CCC4(C(=O)CCC(CCCCCCCC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)" cannot be used as a page name in this wiki.


"8-[(1R,2R)-3-oxo-2-{(Z)-pent-2-enyl}cyclopentyl]octanoyl-CoA" cannot be used as a page name in this wiki.


Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-11517&oldid=43742"